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Recipe: LW Series v1.2
Created by grogar7 31 7
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Name: LW Series v1.2
ID: 49912
Created on: Wed, 08/27/2014 - 20:24
Updated on: Wed, 08/27/2014 - 20:24
Description:

Does a series of local wiggles along backbone from length 13 to length 2, bouncing back and forth from long to short.



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grogar7's picture
User offline. Last seen 6 days 21 hours ago. Offline
Joined: 10/03/2011
changes in v1.2

Dispensed with changing all to loop. That's easy enough to do if you wish. Added set recent best at beginning of script and restore recent best after each stepsize finishes. This should work better if you have bands set or if you want to run at lower CI (just set CI with the slider before running).

Have found this script very useful for quick evo and for changing from low wiggle power to higher power (after Cut and Wiggle :))

grogar7's picture
User offline. Last seen 6 days 21 hours ago. Offline
Joined: 10/03/2011
clarification on recipe description

recipe runs LW on all stepsizes between 13 and 2, changing from long to short to long again, thusly:

stepsize 13,2,12,2A,11,3,10,3A....

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Microsoft, Adobe, RosettaCommons