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Recipe: 674 jpred structs
Created by gramps 79 1590
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Name: 674 jpred structs
ID: 45367
Created on: Thu, 02/14/2013 - 09:14
Updated on: Thu, 02/14/2013 - 17:14
Description:

yields majority structs prediction running jpred versus puzzle 674 AA sequence



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gramps's picture
User offline. Last seen 5 years 21 weeks ago. Offline
Joined: 12/16/2010
recipe output

begin 674 jpred structs
everything has been changed to a loop
Loop(1,11)
Sheet(12,18)
Loop(19,27)
Sheet(28,29)
Helix(30,39)
Loop(40,44)
Helix(45,53)
Loop(54,69)
Sheet(70,70)
Loop(71,84)
Sheet(85,88)
Loop(89,92)
Sheet(93,95)
Loop(96,100)
Sheet(101,108)
Loop(109,113)
Sheet(114,124)
Loop(125,130)
Sheet(131,135)
Loop(136,141)
Sheet(142,147)
Loop(148,148)
Helix(149,156)
Loop(157,158)
end 674 jpred structs

puzzle 674 page:
https://fold.it/portal/node/994456

jpred run for 674 AA sequence (up for about 48 hours):
http://www.compbio.dundee.ac.uk/www-jpred/results/jp_R3_9nZa/jp_R3_9nZa.results.html
http://www.compbio.dundee.ac.uk/www-jpred/results/jp_R3_9nZa/jp_R3_9nZa.html

public Recipe: Jpred helper V1.0 (gets AA string for jpred input):
http://fold.it/portal/recipe/44826

gramps's picture
User offline. Last seen 5 years 21 weeks ago. Offline
Joined: 12/16/2010
**facepalm**

should have added "-11" everywhere and let the $%#@ computer do the subtractions

gramps's picture
User offline. Last seen 5 years 21 weeks ago. Offline
Joined: 12/16/2010
re-oops!

that relates to the 678 recipe of course, long day

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons