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Recipe: Quaking Remix 1.4.4
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Name: Quaking Remix 1.4.4
ID: 102099
Created on: Sun, 07/10/2016 - 09:12
Updated on: Sat, 11/05/2016 - 18:01
Description:

Loop Rebuild modified so that after Remix/Rebuild/Shake/Wiggle etc: it performs some Local Quakes rather than Fuses in an attempt to improve the score.



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Joined: 09/24/2012
Groups: Go Science
1.4.0

Optimized:
Remix & shake
Takes the 4 best ones: local shake, wiggle sidechains, local wiggle selected
Take this best one and further fix with shake, wiggle

Joined: 09/24/2012
Groups: Go Science
1.4.4

--v1.4.1 adding option for number of best remixes to be refined (low is quick, default 4)
-- optional RebuildOnRemix (option in the code only), if false then rebuild this segments on the credited score
-- but the quake is always on rebuild result (like in Ebola).
--v1.4.3 jeff101 display, retired fast, adding NoWiggle (wiggle is dangerous for rama map if the AAs are not the right ones)
--v1.4.4 undo.SetUndo for better performance

Joined: 09/24/2012
Groups: Go Science
1.4.5

Default all protein (not only loop), better for "no rebuild" puzzles. Change is if you want to idealize loops.

Joined: 06/24/2008
Groups: Void Crushers
Error

I am remixing 3-9 segs in that order even though I set it manually from 9-4 segs.

Joined: 09/24/2012
Groups: Go Science
Thanks !

I'll correct it asap

Joined: 09/24/2012
Groups: Go Science
It should work now

But if existing loops are smaller, the receipe will adapt.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons