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951: CASP11 Target Ts824: Sparse Data Contacts
Status: Closed


Name: 951: CASP11 Target Ts824: Sparse Data Contacts
Status: Closed
Created: 07/28/2014
Points: 100
Expired: 08/05/2014 - 18:03
Difficulty: Intermediate
Description: NOTE: The deadline for this target has been extended to cope with a recent server failure.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 2875 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.
Categories: CASP11, Overall, Predicted Contacts, Prediction

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bkoep's picture
User is online Online
Joined: 11/15/2012
Groups: Foldit Staff
Secondary structure predictions

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Joined: 07/21/2013
Groups: Beta Folders
could we get this in text format?

Something that could be put in a Lua script to create Secondary structure.

{ { 19, 'h' }, { 20, 'h' }, { 21, 'h' } }

The above just does three segments.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
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