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920b: CASP11 Target Ts785: Sparse Data Contacts
Status: Closed


Name: 920b: CASP11 Target Ts785: Sparse Data Contacts
Status: Closed
Created: 06/19/2014
Points: 100
Expired: 06/23/2014 - 23:59
Difficulty: Intermediate
Description: NOTE: THIS PUZZLE IS CLOSING EARLIER THAN ORIGINALLY SCHEDULED! This puzzle is a repost of Puzzle 920 which included an erroneous contact map. The set of predicted contacts has been improved for this puzzle, and the Contact Filter has been activated. Players may load in solutions from Puzzle 920.

For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 950 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.
Categories: CASP11, Overall, Predicted Contacts, Prediction

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bkoep's picture
User offline. Last seen 14 hours 4 min ago. Offline
Joined: 11/15/2012
Groups: Foldit Staff
Secondary structure predictions

Here is the sequence logo predicted by the SAM server:

NOTE: Numbering is off as the first 2 residues were trimmed by CASP
H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Joined: 03/07/2009
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The evolver scores don't seem to be added to the ranking yet...

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons