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909: Bonus CASP11 T0787 HIV-1 Env Symmetry Puzzle
Status: Closed
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Summary
| Name: | 909: Bonus CASP11 T0787 HIV-1 Env Symmetry Puzzle |
|---|---|
| Status: | Closed |
| Created: | 06/05/2014 |
| Points: | 100 |
| Expired: | 06/10/2014 - 19:00 |
| Difficulty: | Advanced |
| Description: | The CASP organizers have told us that this HIV-1 Env protein is a trimer, so we are posting a Bonus Round for T0787 as a symmetric trimer! We've provided you with a RosettaServer model to start with. More info in the puzzle comments about different possible folds. |
| Categories: | CASP11, Overall, Prediction, Symmetry |
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We provided you with Model 1 predicted by Robetta, but you can see that Robetta Models 3-5 also formed a trimer, but they are arranged differently:
http://rosettaserver.bakerlab.org/results.jsp?id=48566
Feel free to use those packing arrangements as inspirations for your own!
NOTE the short deadline on this Bonus CASP11 Puzzle, due to Target T0787 being due early on June 11th.
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More information about this CASP Target:
"CASP targets T0787 (gp41) and T0788 (gp120) are two parts of the HIV-1 Env complex, comprising three gp120 subunits and three gp41 subunits."
http://predictioncenter.org/casp11/target.cgi?id=36