puzzle picture
909: Bonus CASP11 T0787 HIV-1 Env Symmetry Puzzle
Status: Closed

Summary

Name: 909: Bonus CASP11 T0787 HIV-1 Env Symmetry Puzzle
Status: Closed
Created: 06/05/2014
Points: 100
Expired: 06/10/2014 - 19:00
Difficulty: Advanced
Description: The CASP organizers have told us that this HIV-1 Env protein is a trimer, so we are posting a Bonus Round for T0787 as a symmetric trimer! We've provided you with a RosettaServer model to start with. More info in the puzzle comments about different possible folds.
Categories: CASP11, Overall, Prediction, Symmetry

Top Groups

RankGroupScorePoints
1Anthropic Dreams16,063100
2Beta Folders15,61481
3L'Alliance Francophone15,49264
4Go Science15,36550
5Gargleblasters15,34339

Top Evolvers

Top Soloists



Need this puzzle? Log in to download.  

Comments

beta_helix's picture
User offline. Last seen 2 days 20 hours ago. Offline
Joined: 05/09/2008
Groups: None
Alternative packing arrangements for this complex:

We provided you with Model 1 predicted by Robetta, but you can see that Robetta Models 3-5 also formed a trimer, but they are arranged differently:

http://rosettaserver.bakerlab.org/results.jsp?id=48566

Feel free to use those packing arrangements as inspirations for your own!

NOTE the short deadline on this Bonus CASP11 Puzzle, due to Target T0787 being due early on June 11th.
________________________________________

More information about this CASP Target:
"CASP targets T0787 (gp41) and T0788 (gp120) are two parts of the HIV-1 Env complex, comprising three gp120 subunits and three gp41 subunits."
http://predictioncenter.org/casp11/target.cgi?id=36

Get Started: Download
  Windows    OSX    Linux  
Windows
(7/8/10)
OSX
(10.7 or later)
Linux
(64-bit)

Are you new to Foldit? Click here.

Are you a student? Click here.

Are you an educator? Click here.
Search
Only search fold.it
Recommend Foldit
User login
Soloists
Evolvers
Groups
Topics
Top New Users
Sitemap

Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons