Are there going to be any Secondary Structure predictions for this puzzle?
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
Not really from what I've seen. I've tried jpred and phyre and it's coming up with 60+ residues of loops
Perhaps after the Scientist Chat we can decide if we want to add more days to this puzzle, or post a different round of it.
I'm running the SAM predictions right now, feel free to check them out while they are running:
http://compbio.soe.ucsc.edu/SAM_T08/results/target08-query-1401418399-9829/summary.html
This is the PDB page of ID2 (with the tails missing):
www.rcsb.org/pdb/explore/explore.do?structureId=4AYA
we don't need extra days, lets quit while I am ahead
More days were not needed to catch you. ;-)
CASP is upon us, and we get a large symmetry puzzle!
Perhaps a a few more days are warranted for this puzzle? :)