Here are the secondary structure predictions!
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Alanines at residues 9 and 74 are highly predicted to be part of a sheet. However, the Alanines at residues 57-59 are predicted to be in a helix!
The above predictions are already on the starting model (based on the horizontal lines in the above figure).
If you are a new Foldit player, please make sure you have completed all these tutorials before trying this puzzle:
- lonely sheets,
- lock and lower,
- structure and rebuild,
- control over clashing.
the starting model appears to be missing the last 37 residues
Thanks for the catch, that was my mistake. I've reposted the puzzle here: http://fold.it/portal/node/997118
I'm guessing that it will be corrected at some point? It looks like it's already been factored into the category scores/rankings.
the current points will be removed and recalculated once that puzzle closes for good.
We apologize for the confusion with this one!