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BETA 60res trimer design test (695) envsmooth=2.0
Status: Closed


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tamirh's picture
User offline. Last seen 6 years 43 weeks ago. Offline
Joined: 05/11/2012
Mutate All

Note: Hitting mutate all when the protein is still an extended chain will still give you arginine. If mutating when the protein is actually folded only gives you arginine then please let us know.

Slight differences in what wiggle and mutate do when the protein is an extended chain are expected. If you could play around with the protein more and see if it does what you expect we would appreciate it.

List of all puzzles with score function variations for this 60 residue tetramer:

tamirh's picture
User offline. Last seen 6 years 43 weeks ago. Offline
Joined: 05/11/2012
What to test

Please use the techniques you've learned from other symmetric design puzzles to see how the different versions of this BETA puzzle react. What we're interested in is having the highest value of envsmooth possible without adversely affecting the tools you use.

One other thing to keep in mind is how puzzle http://fold.it/portal/node/994886 reacts differently also. There are more variables that are changed in this version, not just envsmooth.

Thanks for all the help!

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons