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683: CASP10 Target T0709 Repost
Status: Closed
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Summary
| Name: | 683: CASP10 Target T0709 Repost |
|---|---|
| Status: | Closed |
| Created: | 03/01/2013 |
| Points: | 100 |
| Expired: | 03/12/2013 - 23:00 |
| Difficulty: | Intermediate |
| Description: | We are reposting this 33 residue CASP10 target to try out the new Disulfide Count Score Filter. We are giving you the top-predicted templates from 3 different alignment programs and you can see that they are all very similar. More details about this CASP target are in the puzzle comments. |
| Categories: | CASP10, Overall, Prediction |
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Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
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Here is the sequence logo predicted by the SAM server.
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
You can see that these secondary structure predictions imply that this protein is mostly loop!
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Link to template PDBs:
http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h