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669: De-novo Freestyle 18
Status: Closed


351really int... 51 1399  2,1481
352xdroyer 51 1399  2,1481
353guidoh63 51 1399  2,1481
354JoeAlt 51 1399  2,1481
355MyFilip93 51 1399  2,1481
356Eptasticfail 51 1399  2,1481

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beta_helix's picture
User offline. Last seen 1 week 4 days ago. Offline
Joined: 05/09/2008
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Here are the secondary structure predictions

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 38, 63, 111 & 116 are highly predicted to be part of a sheet. However, the Valines at residues 87 & 142 are not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
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