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Additional info about this CASP Roll target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casproll/target.cgi?id=66
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Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 68 & 43 are highly predicted to be part of a sheet. However, the Valine at residue 25 is not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).
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Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1sji http://www.pdb.org/pdb/explore/explore.do?structureId=2eua http://www.pdb.org/pdb/explore/explore.do?structureId=3ii2

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
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