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ResidueIE Filter Final Test
Status: Closed

Summary

Name: ResidueIE Filter Final Test
Status: Closed
Created: 10/08/2012
Points: 0
Expired: 10/12/2012 - 23:00
Difficulty: Intermediate
Description: Please try out this puzzle with the latest devprev client, as it is the last test of the residueIE filter in devprev before pushing the update to main.
Categories:

Top Groups

RankGroupScorePoints
1Contenders10,1160
2L'Alliance Francophone10,1020
3foldeRNA10,0940
4Anthropic Dreams10,0880
5Go Science10,0780

Top Soloists



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Comments

bertro's picture
User offline. Last seen 15 weeks 5 days ago. Offline
Joined: 05/02/2011
Groups: Beta Folders
Invalid residue found in ResidueIEScoreFilter: TYR

1) My log.txt file is full of this line:

Invalid residue found in ResidueIEScoreFilter: TYR

2) Also, client crashed with:

...
SRVR_THRD starting solution data upload...
core.pack.pack_rotamers: IG: 1007108 bytes
Invalid residue found in ResidueIEScoreFilter: TYR
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 448 rotamers at 4 positions.
core.pack.pack_rotamers: IG: 291768 bytes
Invalid residue found in ResidueIEScoreFilter: TYR
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 784 rotamers at 4 positions.
core.pack.pack_rotamers: IG: 563836 bytes
Invalid residue found in ResidueIEScoreFilter: TYR
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 2036 rotamers at 4 positions.
SRVR_THRD finished solution data upload. took 1.8512 seconds.
SRVR_THRD sending: 253386 993669 group_score

UNHANDLED EXCEPTION
1: no symbol (no line)
2: no symbol (no line)
3: no symbol (no line)
4: no symbol (no line)
5: no symbol (no line)
6: no symbol (no line)
7: no symbol (no line)
8: no symbol (no line)
9: no symbol (no line)
10: no symbol (no line)
11: no symbol (no line)
12: no symbol (no line)
13: no symbol (no line)
14: no symbol (no line)
15: no symbol (no line)
16: no symbol (no line)
17: no symbol (no line)
SRVR_THRD sending: 253386 993669 score

Joined: 05/19/2009
Groups: Contenders
mutate with disabled bands yields lower score

Again, mutating with bands OFF yields an immediate lower score than with bands ON. I find that unusual, however maybe intentional ?

Example: BP_Mwbo in contenders shared group solutions folder.

Joined: 05/19/2009
Groups: Contenders
Still a memory leak

There still is a memory leak, allthough not as big as the other one. Over the course of one hour, it has accumulated around 70 Mb of unreleased data.

Joined: 05/19/2009
Groups: Contenders
memory leak with mutates ?

The memoryleak manifested itself in particular when doing many mutates (rav mutate combo).

Joined: 05/19/2009
Groups: Contenders
Acid tweek also makes the

Acid tweek also makes the client use more memory within an hour (several megabytes).

bertro's picture
User offline. Last seen 15 weeks 5 days ago. Offline
Joined: 05/02/2011
Groups: Beta Folders
Here is another

Here is another error:

core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
Invalid residue found in ResidueIEScoreFilter: TYR
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
Invalid residue found in ResidueIEScoreFilter: TYR
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
Invalid residue found in ResidueIEScoreFilter: TYR
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
Invalid residue found in ResidueIEScoreFilter: TYR
delta_score: -0.0255645
Playing sound: 4
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
Invalid residue found in ResidueIEScoreFilter: TYR
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
Invalid residue found in ResidueIEScoreFilter: TYR
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
Invalid residue found in ResidueIEScoreFilter: TYR
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
Invalid residue found in ResidueIEScoreFilter: TYR
delta_score: 0
Playing sound: 4
delta_score: 0
Playing sound: 4
delta_score: 0
Playing sound: 4
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
Invalid residue found in ResidueIEScoreFilter: TYR
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
Invalid residue found in ResidueIEScoreFilter: TYR
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
Invalid residue found in ResidueIEScoreFilter: TYR
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
Invalid residue found in ResidueIEScoreFilter: TYR
delta_score: -0.0247482
Playing sound: 4
Unhandled exception in thread 24FF3130 (class interactive::application::Thread): Can't start thread. (..\..\..\rosetta_source\src\interactive\application\Thread.cc:61)

ERROR: Unhandled exception: Can't start thread.
ERROR:: Exit from: ..\..\..\rosetta_source\src\interactive\application\Thread.cc line: 210
ERROR: Rosetta exit unexpectedly

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