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614: CASP10 Refinement Puzzle: TR724
Status: Closed
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Soloists
| 1 | hpaege 136 1418 | | 10,859 | 100 | | 2 | Madde 106 31 | Void Crushers | 10,847 | 98 | | 3 | johnmitch 136 12 | | 10,833 | 95 | | 4 | BitSpawn 136 695 | Anthropic Dreams | 10,809 | 93 | | 5 | gmn 5 1 | Anthropic Dreams | 10,801 | 90 | | 6 | SimplySue 65 135 | Anthropic Dreams | 10,800 | 88 | | 7 | doug.ehlert 130 2926 | Contenders | 10,791 | 85 | | 8 | gdnskye 87 91 | Anthropic Dreams | 10,791 | 83 | | 9 | stg123123 136 118 | Beta Folders | 10,783 | 81 | | 10 | marie_s 136 39 | | 10,783 | 79 | | 11 | Wildcat777 136 7430 | Void Crushers | 10,769 | 77 | | 12 | meatexplosion 89 26 | Anthropic Dreams | 10,748 | 74 | | 13 | mimi 13 19 | Contenders | 10,748 | 72 | | 14 | Hanto_FZ140E_4G 41 62 | | 10,740 | 70 | | 15 | christioanchauvin 56 38 | L'Alliance Francophone | 10,736 | 68 | | 16 | Susume 136 13 | Anthropic Dreams | 10,735 | 66 | | 17 | smilingone 9 20 | Beta Folders | 10,731 | 65 | | 18 | petr2 136 7430 | | 10,727 | 63 | | 19 | dembones 78 128 | Contenders | 10,721 | 61 | | 20 | tokens 136 3948 | Anthropic Dreams | 10,721 | 59 | | 21 | crpainter 136 84 | | 10,718 | 58 | | 22 | Bletchley Park 10 7 | Contenders | 10,704 | 56 | | 23 | silverberg 136 45 | | 10,674 | 54 | | 24 | AsDawnBreaks 77 96 | | 10,668 | 53 | | 25 | gitwut 7 10 | Contenders | 10,667 | 51 |
Comments
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| meatexplosion 89 26 | 718: Hand-Foldi...ore | 14,506 | | meatexplosion 89 26 | 717: CASP ROLL ...034 | 11,314 | | bertro 32 11 | Beginner Puzzle...xin | 9,984 | | fold.like.a.c...ion 136 527 | Beginner Puzzle...xin | 9,841 | | yreeen 136 1713 | Beginner Puzzle...xin | 9,580 | | adamjudd 136 7430 | 716 (<15): Two ...ant | 8,717 | | Bjro 136 481 | 716 (<150): Two...ant | 8,763 | | pauldunn 29 23 | 716: Two chains...ant | 8,944 | | Susume 136 13 | 714: 5-year-ann...012 | 11,153 | | Mark- 136 90 | 713: 5-year-ann...011 | 13,310 |
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| meatexplosion 89 26 | 718: Hand-Foldi...ore | 14,506 | | meatexplosion 89 26 | 717: CASP ROLL ...034 | 11,314 | | bertro 32 11 | Beginner Puzzle...xin | 9,984 | | fold.like.a.c...ion 136 527 | Beginner Puzzle...xin | 9,841 | | yreeen 136 1713 | Beginner Puzzle...xin | 9,580 | | adamjudd 136 7430 | 716 (<15): Two ...ant | 8,717 | | Bjro 136 481 | 716 (<150): Two...ant | 8,763 | | pauldunn 29 23 | 716: Two chains...ant | 8,944 | | Susume 136 13 | 714: 5-year-ann...012 | 11,153 | | Mark- 136 90 | 713: 5-year-ann...011 | 13,310 |
| Anthropic Dreams | 718: Hand-Foldi...ore | 14,506 | | Anthropic Dreams | 717: CASP ROLL ...034 | 11,316 | | Beta Folders | Beginner Puzzle...xin | 9,985 | | Anthropic Dreams | Beginner Puzzle...xin | 9,567 | | Anthropic Dreams | Beginner Puzzle...xin | 8,938 | | NWFSC CHS | 716 (<15): Two ...ant | 8,631 | | Contenders | 716 (<150): Two...ant | 8,699 | | Go Science | 716: Two chains...ant | 8,944 | | Anthropic Dreams | 714: 5-year-ann...012 | 11,156 | | Contenders | 713: 5-year-ann...011 | 13,310 |
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This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=209
The CASP10 organizers gave us this hint:
"Starting model GDT_TS=60."
GDT_TS=60 essentially means that 60% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Valines at residues 35, 44, 53, 63 & 87 are highly predicted to be part of a sheet. However, the Alanines at residues 11 & 49-50 are predicted to be in anything.