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614: CASP10 Refinement Puzzle: TR724
Status: Closed

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RankGroupScorePoints
1Anthropic Dreams10,861100
2Void Crushers10,84779
3Contenders10,79161
4Beta Folders10,78347
5L'Alliance Francophone10,73636
6Newton's Cradle10,66827
7foldeRNA10,63320
8Gargleblasters10,63214
9Go Science10,60510
10FoldIt@Netherlands10,5937
11Team Hungary10,5745
12Russian team10,4574
13Freedom Folders10,3712
14Another Hour Another Point10,3452
15SETI.Germany10,3241
16Natural Abilities10,2521
17Nerdfighters10,1611
18Brony@Home10,1141
19Argentina10,0521
20Crunching Family10,0021
21xkcd9,9601
22Mojo Risin'9,9361
23Team Canada9,8001
24DSN @ Home9,7121
25E?????! Heureka!9,6451


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beta_helix's picture
User offline. Last seen 21 hours 30 min ago. Offline
Joined: 05/09/2008
Groups: None
More info here:

This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=209

The CASP10 organizers gave us this hint:

"Starting model GDT_TS=60."

GDT_TS=60 essentially means that 60% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 35, 44, 53, 63 & 87 are highly predicted to be part of a sheet. However, the Alanines at residues 11 & 49-50 are predicted to be in anything.

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