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612: Quick CASP10 Refinement Puzzle: TR722
Status: Closed
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Soloists
| 1 | johnmitch 135 12 | | 11,076 | 70 | | 2 | BitSpawn 135 702 | Anthropic Dreams | 11,040 | 68 | | 3 | hpaege 135 3100 | | 11,032 | 66 | | 4 | Madde 91 28 | Void Crushers | 11,023 | 63 | | 5 | gmn 5 2 | Anthropic Dreams | 10,994 | 61 | | 6 | Bletchley Park 8 5 | Contenders | 10,987 | 59 | | 7 | doug.ehlert 135 7346 | Contenders | 10,965 | 57 | | 8 | stg123123 135 220 | Beta Folders | 10,942 | 55 | | 9 | ErichVonSterich 73 232 | Anthropic Dreams | 10,939 | 53 | | 10 | jakbinimbol 135 7 | | 10,934 | 51 | | 11 | BootsMcGraw 14 20 | Contenders | 10,930 | 49 | | 12 | ComputerMage 135 100 | Russian team | 10,919 | 47 | | 13 | auntdeen 54 14 | Anthropic Dreams | 10,899 | 45 | | 14 | spdenne 39 25 | Void Crushers | 10,899 | 44 | | 15 | randomlil 135 7346 | Beta Folders | 10,895 | 42 | | 16 | Timo van&n... 53 4 | Void Crushers | 10,894 | 40 | | 17 | malthreSC 135 7346 | | 10,893 | 39 | | 18 | justjustin 129 187 | Anthropic Dreams | 10,891 | 37 | | 19 | Rav3n_pl 135 390 | Anthropic Dreams | 10,886 | 36 | | 20 | brow42 135 68 | | 10,876 | 34 | | 21 | bendbob 135 102 | Anthropic Dreams | 10,865 | 33 | | 22 | mimi 12 15 | Contenders | 10,863 | 32 | | 23 | Galaxie 1 3 | Anthropic Dreams | 10,863 | 30 | | 24 | bamh 135 122 | | 10,861 | 29 | | 25 | gramps 67 19 | Anthropic Dreams | 10,851 | 28 |
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This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=195
Note that the organizers gave us this hint:
"Starting model GDT_TS=58."
GDT_TS=58 essentially means that ONLY 58% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Valines at residues 23, 55, 85, 94, 112 & 115 are highly predicted to be part of a helix. However, the Valine at residue 34 is not predicted to be anything.