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610: CASP10 Refinement Puzzle: TR750
Status: Closed
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Groups
| 1 | Anthropic Dreams | 12,384 | 100 | | 2 | foldeRNA | 12,332 | 76 | | 3 | Go Science | 12,320 | 57 | | 4 | Beta Folders | 12,316 | 42 | | 5 | Void Crushers | 12,270 | 30 | | 6 | Contenders | 12,184 | 22 | | 7 | L'Alliance Francophone | 12,178 | 15 | | 8 | FoldIt@Netherlands | 12,177 | 11 | | 9 | Newton's Cradle | 12,166 | 7 | | 10 | Russian team | 12,063 | 5 | | 11 | Gargleblasters | 12,047 | 3 | | 12 | Team Hungary | 12,042 | 2 | | 13 | SETI.Germany | 11,669 | 1 | | 14 | Another Hour Another Point | 11,662 | 1 | | 15 | Natural Abilities | 11,633 | 1 | | 16 | Mojo Risin' | 11,239 | 1 | | 17 | Brony@Home | 11,183 | 1 | | 18 | Czech National Team | 11,030 | 1 | | 19 | Team Canada | 10,911 | 1 | | 20 | DSN @ Home | 10,720 | 1 | | 21 | Geekdo | 10,668 | 1 | | 22 | SETIKAH@KOREA | 10,649 | 1 | | 23 | Skeptics Guide to the Universe | 10,565 | 1 |
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Please note that the Cut Tool is available on all puzzles from now on!
This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=202
The CASP10 organizers gave us this hint:
"Starting model GDT_TS=77."
GDT_TS=77 essentially means that 77% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Valines at residues 84 & 176 are highly predicted to be part of a helix. However, the Valines at residues 64-65 & 99 are predicted to be part of a sheet.