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607: Beginner CASP10 Refinement Puzzle: TR747
Status: Closed
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Soloists
| 1 | gitwut 8 14 | Contenders | 10,633 | 100 | | 2 | BitSpawn 140 647 | Anthropic Dreams | 10,632 | 98 | | 3 | gmn 5 1 | Anthropic Dreams | 10,630 | 95 | | 4 | doug.ehlert 135 226 | Contenders | 10,624 | 93 | | 5 | smilingone 8 19 | Beta Folders | 10,603 | 90 | | 6 | stg123123 140 98 | Beta Folders | 10,593 | 88 | | 7 | kumori 140 115 | foldeRNA | 10,593 | 85 | | 8 | johnmitch 140 10 | | 10,584 | 83 | | 9 | jamiexq 2 68 | Anthropic Dreams | 10,580 | 81 | | 10 | bertro 34 12 | foldeRNA | 10,566 | 78 | | 11 | Galaxie 1 3 | Anthropic Dreams | 10,565 | 76 | | 12 | martinzblavy 23 5 | Contenders | 10,557 | 74 | | 13 | hansvandenhof 20 9 | foldeRNA | 10,552 | 72 | | 14 | gramps 70 28 | Anthropic Dreams | 10,546 | 70 | | 15 | O Seki To 45 16 | Team Hungary | 10,543 | 68 | | 16 | enszyme 125 83 | L'Alliance Francophone | 10,542 | 66 | | 17 | Bletchley Park 12 8 | Contenders | 10,538 | 64 | | 18 | BootsMcGraw 14 25 | Contenders | 10,534 | 62 | | 19 | Neroje 140 6839 | FoldIt@Netherlands | 10,533 | 61 | | 20 | meatexplosion 92 27 | Anthropic Dreams | 10,531 | 59 | | 21 | Timo van&n... 51 6 | Void Crushers | 10,529 | 57 | | 22 | jakbinimbol 140 4 | | 10,522 | 55 | | 23 | spmm 140 2276 | Void Crushers | 10,521 | 54 | | 24 | harp 39 112 | Anthropic Dreams | 10,520 | 52 | | 25 | spdenne 33 21 | Void Crushers | 10,516 | 51 |
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NOTE: The Cut Tool IS available for this puzzle, but only in the Developer Preview.
(If you want to try it out, please read "How do I try out the Foldit Developer Preview?" in the FAQ: http://fold.it/portal/info/faq )
Once the next update posts (early next week) the Cut Tool will be available in main.
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This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=204
Note that the organizers gave us this hint:
"Starting model GDT_TS=83."
GDT_TS=83 essentially means that ONLY 83% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Valines at residues 24, 46, 48, 90 & 92-93 are highly predicted to be part of a sheet. However, the Valine at residue 11 is predicted to be anything.