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607: Beginner CASP10 Refinement Puzzle: TR747
Status: Closed
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Evolvers
| 1 | BitSpawn 141 684 | Anthropic Dreams | 10,636 | 100 | | 2 | Bletchley Park 8 5 | Contenders | 10,629 | 98 | | 3 | mimi 12 15 | Contenders | 10,628 | 95 | | 4 | lamoille 26 206 | Anthropic Dreams | 10,628 | 93 | | 5 | gitwut 7 11 | Contenders | 10,627 | 90 | | 6 | dembones 35 54 | Contenders | 10,626 | 88 | | 7 | BootsMcGraw 13 19 | Contenders | 10,620 | 85 | | 8 | martinzblavy 27 9 | Contenders | 10,618 | 83 | | 9 | Angus 14 65 | Beta Folders | 10,601 | 81 | | 10 | ErichVonSterich 62 198 | Anthropic Dreams | 10,599 | 78 | | 11 | barbaranne 23 242 | Anthropic Dreams | 10,599 | 76 | | 12 | jamiexq 2 53 | Anthropic Dreams | 10,598 | 74 | | 13 | smilingone 9 16 | Beta Folders | 10,591 | 72 | | 14 | SimplySue 66 172 | Anthropic Dreams | 10,589 | 70 | | 15 | micheldeweerd 120 71 | foldeRNA | 10,589 | 68 | | 16 | svenmh 48 68 | foldeRNA | 10,583 | 66 | | 17 | bertro 30 10 | foldeRNA | 10,583 | 64 | | 18 | phi16 11 47 | Anthropic Dreams | 10,581 | 62 | | 19 | alwen 6 81 | Anthropic Dreams | 10,544 | 61 | | 20 | RabidNimravid 141 7168 | Anthropic Dreams | 10,542 | 59 | | 21 | mbinfield 132 3135 | Go Science | 10,542 | 57 | | 22 | westrel3 15 203 | Anthropic Dreams | 10,540 | 55 | | 23 | pauldunn 24 18 | Go Science | 10,535 | 54 | | 24 | jeff101 141 7168 | Go Science | 10,532 | 52 | | 25 | spdenne 37 25 | Void Crushers | 10,528 | 51 |
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NOTE: The Cut Tool IS available for this puzzle, but only in the Developer Preview.
(If you want to try it out, please read "How do I try out the Foldit Developer Preview?" in the FAQ: http://fold.it/portal/info/faq )
Once the next update posts (early next week) the Cut Tool will be available in main.
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This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=204
Note that the organizers gave us this hint:
"Starting model GDT_TS=83."
GDT_TS=83 essentially means that ONLY 83% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Valines at residues 24, 46, 48, 90 & 92-93 are highly predicted to be part of a sheet. However, the Valine at residue 11 is predicted to be anything.