|
|
|
605: CASP10 Refinement Puzzle: TR710
Status: Closed
|
Evolvers
| 1 | Darkknight900 72 256 | Anthropic Dreams | 13,087 | 100 | | 2 | BitSpawn 136 695 | Anthropic Dreams | 13,087 | 98 | | 3 | ErichVonSterich 62 197 | Anthropic Dreams | 13,087 | 95 | | 4 | barbaranne 15 186 | Anthropic Dreams | 13,082 | 93 | | 5 | jamiexq 3 72 | Anthropic Dreams | 13,081 | 90 | | 6 | lamoille 22 192 | Anthropic Dreams | 13,075 | 88 | | 7 | O Seki To 46 17 | Team Hungary | 13,066 | 85 | | 8 | Ribo-soma 60 522 | Team Hungary | 13,066 | 83 | | 9 | histon 59 405 | Team Hungary | 13,066 | 80 | | 10 | alwen 6 77 | Anthropic Dreams | 13,064 | 78 | | 11 | phi16 8 42 | Anthropic Dreams | 13,059 | 76 | | 12 | spdenne 28 22 | Void Crushers | 13,055 | 74 | | 13 | smilingone 9 20 | Beta Folders | 13,027 | 70 | | 14 | westrel3 17 174 | Anthropic Dreams | 13,025 | 68 | | 15 | mimi 13 19 | Contenders | 13,024 | 66 | | 16 | mottiger 136 502 | Anthropic Dreams | 13,023 | 64 | | 17 | martinzblavy 21 4 | Contenders | 13,023 | 62 | | 18 | keithv 136 7430 | Anthropic Dreams | 13,022 | 60 | | 19 | Lindata 24 117 | Anthropic Dreams | 13,022 | 59 | | 20 | BootsMcGraw 12 25 | Contenders | 13,020 | 57 | | 21 | gitwut 7 10 | Contenders | 13,017 | 55 | | 22 | stg123123 136 118 | Beta Folders | 12,988 | 53 | | 23 | Angus 16 63 | Beta Folders | 12,965 | 52 | | 24 | Bletchley Park 10 7 | Contenders | 12,924 | 50 | | 25 | Rav3n_pl 136 177 | Anthropic Dreams | 12,819 | 49 |
Comments
|
|
| | |
| | |
| | |
| | |
| Soloists | |
| Evolvers | |
| Groups | |
| Topics | |
|
| jamiexq 3 72 | 718: Hand-Foldi...ore | 14,515 | | meatexplosion 89 26 | 717: CASP ROLL ...034 | 11,314 | | bertro 32 11 | Beginner Puzzle...xin | 9,986 | | fold.like.a.c...ion 136 527 | Beginner Puzzle...xin | 9,841 | | yreeen 136 1713 | Beginner Puzzle...xin | 9,580 | | adamjudd 136 7430 | 716 (<15): Two ...ant | 8,717 | | Bjro 136 481 | 716 (<150): Two...ant | 8,763 | | pauldunn 29 23 | 716: Two chains...ant | 8,944 | | Susume 136 13 | 714: 5-year-ann...012 | 11,153 | | Mark- 136 90 | 713: 5-year-ann...011 | 13,310 |
|
|
| | |
| jamiexq 3 72 | 718: Hand-Foldi...ore | 14,515 | | meatexplosion 89 26 | 717: CASP ROLL ...034 | 11,314 | | bertro 32 11 | Beginner Puzzle...xin | 9,986 | | fold.like.a.c...ion 136 527 | Beginner Puzzle...xin | 9,841 | | yreeen 136 1713 | Beginner Puzzle...xin | 9,580 | | adamjudd 136 7430 | 716 (<15): Two ...ant | 8,717 | | Bjro 136 481 | 716 (<150): Two...ant | 8,763 | | pauldunn 29 23 | 716: Two chains...ant | 8,944 | | Susume 136 13 | 714: 5-year-ann...012 | 11,153 | | Mark- 136 90 | 713: 5-year-ann...011 | 13,310 |
| Anthropic Dreams | 718: Hand-Foldi...ore | 14,515 | | Anthropic Dreams | 717: CASP ROLL ...034 | 11,318 | | Beta Folders | Beginner Puzzle...xin | 9,986 | | Anthropic Dreams | Beginner Puzzle...xin | 9,567 | | Anthropic Dreams | Beginner Puzzle...xin | 8,938 | | NWFSC CHS | 716 (<15): Two ...ant | 8,631 | | Contenders | 716 (<150): Two...ant | 8,699 | | Contenders | 716: Two chains...ant | 8,950 | | Anthropic Dreams | 714: 5-year-ann...012 | 11,156 | | Contenders | 713: 5-year-ann...011 | 13,310 |
|
|
|
Please note that the Cut Tool is available on this puzzle!
This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=188
The CASP10 organizers gave us this hint:
"Starting model GDT_TS=75."
GDT_TS=75 essentially means that 75% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Valines at residues 19, 52, 85, 145 & 177 are highly predicted to be part of a helix. However, the Valines at residues 96 & 100 are not.