|
|
|
605: CASP10 Refinement Puzzle: TR710
Status: Closed
|
Groups
| 1 | Anthropic Dreams | 13,089 | 100 | | 2 | Team Hungary | 13,066 | 77 | | 3 | Void Crushers | 13,057 | 58 | | 4 | Go Science | 13,051 | 44 | | 5 | L'Alliance Francophone | 13,043 | 32 | | 6 | Beta Folders | 13,028 | 23 | | 7 | foldeRNA | 13,027 | 17 | | 8 | Contenders | 13,024 | 12 | | 9 | FoldIt@Netherlands | 12,891 | 8 | | 10 | Newton's Cradle | 12,880 | 6 | | 11 | Another Hour Another Point | 12,823 | 4 | | 12 | Richard Dawkins Foundation | 12,817 | 3 | | 13 | Russian team | 12,768 | 2 | | 14 | Gargleblasters | 12,720 | 1 | | 15 | Mojo Risin' | 12,642 | 1 | | 16 | Natural Abilities | 12,616 | 1 | | 17 | 7Monkeys | 12,595 | 1 | | 18 | SETI.Germany | 12,591 | 1 | | 19 | Geekdo | 12,456 | 1 | | 20 | Team Canada | 12,366 | 1 | | 21 | Czech National Team | 12,352 | 1 | | 22 | Skeptics Guide to the Universe | 12,263 | 1 | | 23 | Friday Lab | 12,178 | 1 | | 24 | DSN @ Home | 12,148 | 1 |
Comments
|
|
| | |
| | |
| | |
| | |
| Soloists | |
| Evolvers | |
| Groups | |
| Topics | |
|
| meatexplosion 89 26 | 718: Hand-Foldi...ore | 14,506 | | meatexplosion 89 26 | 717: CASP ROLL ...034 | 11,314 | | bertro 32 11 | Beginner Puzzle...xin | 9,985 | | fold.like.a.c...ion 136 527 | Beginner Puzzle...xin | 9,841 | | yreeen 136 1713 | Beginner Puzzle...xin | 9,580 | | adamjudd 136 7430 | 716 (<15): Two ...ant | 8,717 | | Bjro 136 481 | 716 (<150): Two...ant | 8,763 | | pauldunn 29 23 | 716: Two chains...ant | 8,944 | | Susume 136 13 | 714: 5-year-ann...012 | 11,153 | | Mark- 136 90 | 713: 5-year-ann...011 | 13,310 |
|
|
| | |
| meatexplosion 89 26 | 718: Hand-Foldi...ore | 14,506 | | meatexplosion 89 26 | 717: CASP ROLL ...034 | 11,314 | | bertro 32 11 | Beginner Puzzle...xin | 9,985 | | fold.like.a.c...ion 136 527 | Beginner Puzzle...xin | 9,841 | | yreeen 136 1713 | Beginner Puzzle...xin | 9,580 | | adamjudd 136 7430 | 716 (<15): Two ...ant | 8,717 | | Bjro 136 481 | 716 (<150): Two...ant | 8,763 | | pauldunn 29 23 | 716: Two chains...ant | 8,944 | | Susume 136 13 | 714: 5-year-ann...012 | 11,153 | | Mark- 136 90 | 713: 5-year-ann...011 | 13,310 |
| Anthropic Dreams | 718: Hand-Foldi...ore | 14,506 | | Anthropic Dreams | 717: CASP ROLL ...034 | 11,318 | | Beta Folders | Beginner Puzzle...xin | 9,985 | | Anthropic Dreams | Beginner Puzzle...xin | 9,567 | | Anthropic Dreams | Beginner Puzzle...xin | 8,938 | | NWFSC CHS | 716 (<15): Two ...ant | 8,631 | | Contenders | 716 (<150): Two...ant | 8,699 | | Go Science | 716: Two chains...ant | 8,944 | | Anthropic Dreams | 714: 5-year-ann...012 | 11,156 | | Contenders | 713: 5-year-ann...011 | 13,310 |
|
|
|
Please note that the Cut Tool is available on this puzzle!
This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=188
The CASP10 organizers gave us this hint:
"Starting model GDT_TS=75."
GDT_TS=75 essentially means that 75% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Valines at residues 19, 52, 85, 145 & 177 are highly predicted to be part of a helix. However, the Valines at residues 96 & 100 are not.