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598: CASP10 Refinement Puzzle: TR712
Status: Closed
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Soloists
| Rank | Player | Group | Score | Points |
|---|---|---|---|---|
| 201 | Vie 46 1295 | 10,035 | 1 | |
| 202 | RexXxMaster 46 1295 | 9,461 | 1 | |
| 203 | spvincent 31 13 | Contenders | 9,279 | 1 |
| 204 | barbaranne 46 1295 | Anthropic Dreams | 9,279 | 1 |
| 205 |  jflat06 46 410 | 9,279 | 1 | |
| 206 | ingoneato 46 572 | 9,279 | 1 | |
| 207 | histon 46 1295 | Hun-Magyar Csapat | 9,279 | 1 |
| 208 | Wildcat777 46 1295 | Void Crushers | 9,279 | 1 |
| 209 | Inafalutamen 46 1295 | 9,279 | 1 | |
| 210 | Artiem 46 1295 | 9,279 | 1 | |
| 211 | Rita_Gat 46 1295 | Russian team | 9,279 | 1 |
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This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=170
Note that the organizers gave us this hint:
"Starting model GDT_TS=92. Regions worth specific attention: 43-52, 79-92, 104-118."
GDT_TS=92 essentially means that 92% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Valines at residues 18, 20, 42 & 148 are highly predicted to be part of a sheet. However, the Valine at residue 105 is predicted to be in anything.