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586: Large CASP10 Refinement Puzzle: TR681
Status: Closed
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Soloists
| 1 | bendbob 136 95 | Anthropic Dreams | 13,611 | 100 | | 2 | gmn 5 1 | Anthropic Dreams | 13,538 | 98 | | 3 | spmm 136 2530 | Void Crushers | 13,535 | 95 | | 4 | meatexplosion 89 25 | Anthropic Dreams | 13,508 | 92 | | 5 | stg123123 136 120 | Beta Folders | 13,433 | 90 | | 6 | randomlil 136 7442 | Go Science | 13,417 | 87 | | 7 | bertro 32 10 | foldeRNA | 13,414 | 84 | | 8 | smilingone 9 19 | Beta Folders | 13,389 | 82 | | 9 | martinzblavy 21 5 | Contenders | 13,372 | 80 | | 10 | Madde 106 31 | Void Crushers | 13,371 | 77 | | 11 | doug.ehlert 130 2929 | Contenders | 13,353 | 75 | | 12 | dembones 69 121 | Contenders | 13,348 | 73 | | 13 | Wildcat777 136 7442 | Void Crushers | 13,332 | 71 | | 14 | harp 46 113 | Anthropic Dreams | 13,327 | 69 | | 15 | johnmitch 136 11 | | 13,321 | 67 | | 16 | mimi 12 21 | Contenders | 13,310 | 65 | | 17 | cobaltteal 136 48 | | 13,298 | 63 | | 18 | christioanchauvin 47 37 | L'Alliance Francophone | 13,295 | 61 | | 19 | gitwut 7 12 | Contenders | 13,260 | 59 | | 20 | Neroje 136 601 | FoldIt@Netherlands | 13,260 | 57 | | 21 | Bletchley Park 10 6 | Contenders | 13,254 | 55 | | 22 | Ignacio 136 7442 | Go Science | 13,215 | 54 | | 23 | pauldunn 28 22 | Go Science | 13,209 | 52 | | 24 | saint Jean 96 52 | L'Alliance Francophone | 13,181 | 50 | | 25 | Timo van&n... 51 4 | Void Crushers | 13,177 | 49 |
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This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=140
Note that the organizers gave us this hint:
"Starting model GDT_TS=78."
GDT_TS=78 essentially means that 78% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test
We believe that MULTICOM-CONSTRUCT_TS3.pdb is identical to the refinement model.
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Leucines at residues 14-15 are highly predicted to be in a helix. However, the Leucines at residues 54 & 86 are predicted to be part of a sheet.