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583: Large CASP10 Refinement Puzzle: TR689
Status: Closed
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Evolvers
| 1 | SimplySue 61 120 | Anthropic Dreams | 14,390 | 100 | | 2 | barbaranne 11 175 | Anthropic Dreams | 14,380 | 98 | | 3 | lamoille 22 197 | Anthropic Dreams | 14,370 | 96 | | 4 | jamiexq 2 68 | Anthropic Dreams | 14,370 | 93 | | 5 | Lindata 25 118 | Anthropic Dreams | 14,370 | 91 | | 6 | phi16 7 48 | Anthropic Dreams | 14,366 | 89 | | 7 | alwen 6 80 | Anthropic Dreams | 14,365 | 87 | | 8 | spdenne 33 21 | Void Crushers | 14,361 | 85 | | 9 | spmm 140 2276 | Void Crushers | 14,329 | 83 | | 10 | ErichVonSterich 64 150 | Anthropic Dreams | 14,294 | 81 | | 11 | Bletchley Park 12 8 | Contenders | 14,293 | 79 | | 12 | mimi 15 20 | Contenders | 14,291 | 77 | | 13 | doug.ehlert 135 226 | Contenders | 14,288 | 75 | | 14 | O Seki To 45 16 | Team Hungary | 14,287 | 73 | | 15 | histon 57 378 | Team Hungary | 14,285 | 71 | | 16 | Ribo-soma 58 629 | Team Hungary | 14,285 | 69 | | 17 | gitwut 8 14 | Contenders | 14,279 | 68 | | 18 | dembones 95 213 | Contenders | 14,279 | 66 | | 19 | spvincent 60 92 | Contenders | 14,278 | 64 | | 20 | keithv 140 6839 | Anthropic Dreams | 14,273 | 63 | | 21 | krulon 140 6839 | foldeRNA | 14,255 | 61 | | 22 | mrmookie 140 1153 | Contenders | 14,234 | 59 | | 23 | martinzblavy 23 5 | Contenders | 14,233 | 58 | | 24 | BootsMcGraw 14 25 | Contenders | 14,227 | 56 | | 25 | B_2 140 6839 | Go Science | 14,214 | 55 |
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This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=132
Note that the organizers gave us this hint:
"Starting model GDT_TS=87."
GDT_TS=87 essentially means that 87% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test
We believe that Jiang_Fold_TS1.pdb is identical to the refinement model.
Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Valines at residues 34, 49, 54, 57, 66, 71 & 183 are highly predicted to be in sheets. However, the Valines at residues 3, 107, 137 & 144 are predicted to be anything.