puzzle picture
582: Beginner CASP10 Refinement Puzzle: TR674
Status: Closed

Soloists

RankPlayerGroupScorePoints
176Mr_Jolty 135 125 Natural Abilities10,8971
177Datstandin 135 753 Anthropic Dreams10,8961
178bojler 135 6358  10,8951
179abiogenesis 135 6358  10,8901
180al_ 135 6358  10,8901
181crpainter 135 82  10,8791
182Schnecke 135 320  10,8791
183JayArrgh 135 6358  10,8701
184Arne Heessels 135 262  10,8631
185RandyFithian 135 6358  10,8581
186monkry 135 248  10,8561
187deLaCeiba 135 311  10,8521
188NunoAlmeida 135 6358  10,8511
189heidibautista 135 6358  10,8511
190Uwe 135 6358  10,8481
191Squirrely 135 326  10,8421
192wenskye 135 2297 Anthropic Dreams10,8411
193philcalhoun 135 892  10,8391
194putnik 135 2897 Russian team10,8381
195lakeyja900 135 6358  10,8351
196tineke 135 6358  10,8281
197Louise DJ 135 6358  10,8271
198martinf 135 318  10,8271
199TheMan2000 135 3022 Nerdfighters10,8261
200NR22 135 2232  10,8251
 

Comments

Joined: 05/09/2008
Groups: None
More info here:

This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=131&view=refinement

Note that the organizers gave us this hint:

"Starting model GDT_TS=84."

GDT_TS=84 essentially means that 84% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test

Secondary Structure Predictions below:

Joined: 05/09/2008
Groups: None
Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 10, 12 & 45 are highly predicted to be part of a helix. However, the Valine at residue 93 is predicted to be in a sheet.

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Supported by: UW Center for Game Science, UW Department of Computer Science and Engineering, UW Baker Lab, DARPA, NSF, HHMI, Microsoft, and Adobe