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577: CASP10 Refinement Puzzle: TR688
Status: Closed
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Groups
| 1 | Contenders | 12,840 | 100 | | 2 | Go Science | 12,831 | 74 | | 3 | Void Crushers | 12,805 | 53 | | 4 | FoldIt@Netherlands | 12,775 | 38 | | 5 | L'Alliance Francophone | 12,713 | 27 | | 6 | Anthropic Dreams | 12,614 | 18 | | 7 | Team Hungary | 12,554 | 13 | | 8 | foldeRNA | 12,545 | 8 | | 9 | putting the eat in meat | 12,530 | 6 | | 10 | Gargleblasters | 12,373 | 4 | | 11 | Freedom Folders | 12,047 | 2 | | 12 | Russian team | 12,017 | 2 | | 13 | SETI.Germany | 11,850 | 1 | | 14 | 7Monkeys | 11,747 | 1 | | 15 | Nerdfighters | 11,706 | 1 | | 16 | Androids | 11,559 | 1 | | 17 | BOINC.Italy | 11,518 | 1 | | 18 | Mojo Risin' | 11,334 | 1 | | 19 | Team China | 11,204 | 1 | | 20 | Czech National Team | 11,195 | 1 | | 21 | Skeptics Guide to the Universe | 11,092 | 1 | | 22 | Another Hour Another Point | 10,383 | 1 | | 23 | Geekdo | 9,938 | 1 | | 24 | DSN @ Home | 9,260 | 1 |
Comments
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| pauldunn 28 22 | Beginner Puzzle...xin | 9,935 | | fold.like.a.c...ion 139 1689 | Beginner Puzzle...xin | 9,388 | | yreeen 139 4570 | Beginner Puzzle...xin | 9,580 | | etFolly 139 6857 | 716 (<15): Two ...ant | 8,529 | | Bjro 139 1764 | 716 (<150): Two...ant | 8,724 | | marie_s 139 39 | 716: Two chains...ant | 8,912 | | hansvandenhof 20 9 | 714: 5-year-ann...012 | 11,122 | | Mark- 139 94 | 713: 5-year-ann...011 | 13,310 | | markm457 2 2 | Beginner Puzzle...yme | 11,388 | | zeroblue 139 6857 | Beginner Puzzle...yme | 11,148 | | zeroblue 139 6857 | Beginner Puzzle...yme | 11,013 |
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| pauldunn 28 22 | Beginner Puzzle...xin | 9,935 | | fold.like.a.c...ion 139 1689 | Beginner Puzzle...xin | 9,388 | | yreeen 139 4570 | Beginner Puzzle...xin | 9,580 | | etFolly 139 6857 | 716 (<15): Two ...ant | 8,529 | | Bjro 139 1764 | 716 (<150): Two...ant | 8,724 | | marie_s 139 39 | 716: Two chains...ant | 8,912 | | hansvandenhof 20 9 | 714: 5-year-ann...012 | 11,122 | | Mark- 139 94 | 713: 5-year-ann...011 | 13,310 | | markm457 2 2 | Beginner Puzzle...yme | 11,388 | | zeroblue 139 6857 | Beginner Puzzle...yme | 11,148 | | zeroblue 139 6857 | Beginner Puzzle...yme | 11,013 |
| Go Science | Beginner Puzzle...xin | 9,935 | | Anthropic Dreams | Beginner Puzzle...xin | 8,938 | | NETD | 716 (<15): Two ...ant | 8,450 | | NETD | 716 (<150): Two...ant | 8,407 | | Anthropic Dreams | 716: Two chains...ant | 8,888 | | Anthropic Dreams | 714: 5-year-ann...012 | 11,140 | | Contenders | 713: 5-year-ann...011 | 13,310 | | Anthropic Dreams | Beginner Puzzle...yme | 11,388 | | Gargleblasters | Beginner Puzzle...yme | 11,080 | | NWFSC CHS | Beginner Puzzle...yme | 10,806 |
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Here is the CASP link for this Refinement target:
http://predictioncenter.org/casp10/target.cgi?id=116&view=refinement
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Here is the sequence logo predicted by the SAM server.
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Leucines at residues 87 & 110-11 are highly predicted to be in a sheet. However, the Leucine at residue 20 is predicted to be anything.
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Note that we are giving you over 7 days to work on this one.
It's a large protein you have 3 templates to work with, so we hope that you will try changing the alignments on each of them.