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573b: Advanced CASP10 Refinement Puzzle: TR663
Status: Closed
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Summary
| Name: |
573b: Advanced CASP10 Refinement Puzzle: TR663 |
| Status: |
Closed |
| Created: |
06/10/2012 |
| Points: |
100 |
| Difficulty: |
Advanced |
| Description: |
The CASP organizers have told us that two regions of this starting model are incorrect, so we have modified both these regions into 2 extended chains. You can use the alignment tool to thread the remaining original regions. We will repost this puzzle using the unmodifided starting model, letting you load in your solutions from this puzzle. Secondary structure predictions for this Refinement target are posted in the puzzle comments. |
| Categories: | CASP, Overall, Prediction |
Top Groups
Top Evolvers
Top Soloists
Comments
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| pauldunn 28 22 | Beginner Puzzle...xin | 9,943 | | fold.like.a.c...ion 139 1689 | Beginner Puzzle...xin | 9,388 | | yreeen 139 4570 | Beginner Puzzle...xin | 9,580 | | summersm1@nwfsc.edu 139 2932 | 716 (<15): Two ...ant | 8,631 | | Bjro 139 1764 | 716 (<150): Two...ant | 8,727 | | marie_s 139 39 | 716: Two chains...ant | 8,912 | | hansvandenhof 20 9 | 714: 5-year-ann...012 | 11,146 | | Mark- 139 94 | 713: 5-year-ann...011 | 13,310 | | markm457 2 2 | Beginner Puzzle...yme | 11,388 | | zeroblue 139 6857 | Beginner Puzzle...yme | 11,148 | | zeroblue 139 6857 | Beginner Puzzle...yme | 11,013 |
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| pauldunn 28 22 | Beginner Puzzle...xin | 9,943 | | fold.like.a.c...ion 139 1689 | Beginner Puzzle...xin | 9,388 | | yreeen 139 4570 | Beginner Puzzle...xin | 9,580 | | summersm1@nwfsc.edu 139 2932 | 716 (<15): Two ...ant | 8,631 | | Bjro 139 1764 | 716 (<150): Two...ant | 8,727 | | marie_s 139 39 | 716: Two chains...ant | 8,912 | | hansvandenhof 20 9 | 714: 5-year-ann...012 | 11,146 | | Mark- 139 94 | 713: 5-year-ann...011 | 13,310 | | markm457 2 2 | Beginner Puzzle...yme | 11,388 | | zeroblue 139 6857 | Beginner Puzzle...yme | 11,148 | | zeroblue 139 6857 | Beginner Puzzle...yme | 11,013 |
| Go Science | Beginner Puzzle...xin | 9,943 | | Anthropic Dreams | Beginner Puzzle...xin | 8,938 | | NWFSC CHS | 716 (<15): Two ...ant | 8,631 | | NETD | 716 (<150): Two...ant | 8,407 | | Anthropic Dreams | 716: Two chains...ant | 8,889 | | Anthropic Dreams | 714: 5-year-ann...012 | 11,146 | | Contenders | 713: 5-year-ann...011 | 13,310 | | Anthropic Dreams | Beginner Puzzle...yme | 11,388 | | Gargleblasters | Beginner Puzzle...yme | 11,080 | | NWFSC CHS | Beginner Puzzle...yme | 10,806 |
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Here is the CASP link for this Refinement target:
http://predictioncenter.org/casp10/target.cgi?id=103&view=refinement
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Here is the sequence logo predicted by the SAM server.
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Leucines at residues 32 & 115 are highly predicted to be in a sheet. However, the Leucine at residue 103 is predicted to be in a helix.