Sun, 06/10/2012 - 22:29
#2
just to improve the handling
just to improve the handling of the protein you could make an alignment puzzle out of it, so that we can use the cut tool
Mon, 06/11/2012 - 04:06
#3
great suggestion, mottiger!
Mon, 06/11/2012 - 18:37
#4
Please
make cut tool available on any puzzle :)
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Here is the CASP link for this Refinement target:
http://predictioncenter.org/casp10/target.cgi?id=103&view=refinement
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Here is the sequence logo predicted by the SAM server.
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Leucines at residues 32 & 115 are highly predicted to be in a sheet. However, the Leucine at residue 103 is predicted to be in a helix.