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570: CASP10 Target T0700
Status: Closed
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Summary
| Name: | 570: CASP10 Target T0700 |
|---|---|
| Status: | Closed |
| Created: | 06/05/2012 |
| Points: | 100 |
| Difficulty: | Advanced |
| Description: | The eighth CASP10 target is not an easy one, but at least it's only 86 residues. We are providing you with 5 different templates, before giving you the server predictions once they are released. Please try out all 5 templates as they have different topologies and we don't know which one is correct. More details about this CASP target are in the puzzle comments. |
| Categories: | CASP, Overall, Prediction |
![](http://128.95.1.228:8000/tracking_pixel.gif?events=scAdd&f=1111&wdata={"x":12, "y":11}){kind=tracking}
Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=101
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Here is the sequence logo predicted by the SAM server.
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Leucines at residues 11, 19, 36, 61, 63 & 71 are highly predicted to be in a helix. However, the Leucines at residues 7 & 29 are predicted to be anything.
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Link to template PDBs:
http://www.pdb.org/pdb/explore/explore.do?structureId=3l2o
http://www.pdb.org/pdb/explore/explore.do?structureId=3mks
http://www.pdb.org/pdb/explore/explore.do?structureId=2p9x
http://www.pdb.org/pdb/explore/explore.do?structureId=1yo7
http://www.pdb.org/pdb/explore/explore.do?structureId=1kx9