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559: CASP10 Target T0673
Status: Closed
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Soloists
| 76 | infjamc 140 1871 | Contenders | 9,660 | 16 | | 77 | gitwut 8 14 | | 9,657 | 15 | | 78 | tallguy-13088 140 132 | | 9,655 | 15 | | 79 | silverberg 140 46 | | 9,648 | 14 | | 80 | firejuggler 116 149 | Void Crushers | 9,645 | 14 | | 81 | lynnai 83 72 | Anthropic Dreams | 9,641 | 13 | | 82 | Dixie2 118 2026 | foldeRNA | 9,635 | 13 | | 83 | Judecca 140 1659 | Another Hour Another Point | 9,635 | 13 | | 84 | jermainiac 19 29 | Anthropic Dreams | 9,631 | 12 | | 85 | larry25427 140 136 | | 9,629 | 12 | | 86 | miss wanr 140 3989 | foldeRNA | 9,627 | 12 | | 87 | wenskye 140 2456 | Anthropic Dreams | 9,623 | 11 | | 88 | cbwest 140 34 | foldeRNA | 9,621 | 11 | | 89 | jobo0502 140 127 | L'Alliance Francophone | 9,618 | 11 | | 90 | dnevill 140 6839 | | 9,614 | 10 | | 91 | ivalnic 140 197 | | 9,610 | 10 | | 92 | heather-1 140 1034 | | 9,607 | 10 | | 93 | caglar 140 60 | | 9,605 | 9 | | 94 | Cyberkashi 140 2336 | | 9,600 | 9 | | 95 | pgiles 140 57 | | 9,599 | 9 | | 96 | kumori 140 115 | foldeRNA | 9,598 | 9 | | 97 | SKSbell 140 101 | | 9,596 | 8 | | 98 | hpaege 140 384 | | 9,596 | 8 | | 99 | aendgraend 91 165 | SETI.Germany | 9,594 | 8 | | 100 | Close At&n... 140 431 | | 9,593 | 8 |
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Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=70
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Here is the sequence logo predicted by the SAM server.
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Valines at residues 6, 7, & 10 are highly predicted to be in a helix. However, the Valines at residues 59, 60, 64 & 65 are predicted to be in a sheet.
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Link to template PDBs:
http://www.pdb.org/pdb/explore/explore.do?structureId=3s4k
http://www.pdb.org/pdb/explore/explore.do?structureId=1olp
http://www.pdb.org/pdb/explore/explore.do?structureId=2w9q
http://www.pdb.org/pdb/explore/explore.do?structureId=2e12
http://www.pdb.org/pdb/explore/explore.do?structureId=3e1e
http://www.pdb.org/pdb/explore/explore.do?structureId=1q6w
Keep in mind that it's very likely that ONLY ONE of these templates is close to the native (if we're lucky!)