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559: CASP10 Target T0673
Status: Closed
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Soloists
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| 1 | BitSpawn 74 139 | Anthropic Dreams | 10,097 | 100 | | 2 | meatexplosion 74 1534 | Anthropic Dreams | 10,069 | 98 | | 3 | dembones 74 1534 | Contenders | 10,022 | 96 | | 4 | BootsMcGraw 10 7 | Contenders | 10,013 | 94 | | 5 | Wildcat777 74 1534 | Void Crushers | 9,998 | 92 | | 6 | marie_s 74 1534 | | 9,989 | 90 | | 7 | Ignacio 74 1534 | Go Science | 9,986 | 88 | | 8 | tokens 74 1534 | Anthropic Dreams | 9,985 | 86 | | 9 | christioanchauvin 74 24 | L'Alliance Francophone | 9,981 | 84 | | 10 | spmm 55 177 | Void Crushers | 9,978 | 82 | | 11 | Bletchley Park 9 9 | Contenders | 9,977 | 80 | | 12 | Mark- 74 1534 | Contenders | 9,964 | 79 | | 13 | auntdeen 74 124 | Anthropic Dreams | 9,959 | 77 | | 14 | keithv 74 1534 | Anthropic Dreams | 9,958 | 75 | | 15 | stg123123 74 1534 | | 9,956 | 73 | | 16 | mimi 74 207 | Contenders | 9,949 | 72 | | 17 | pauldunn 74 390 | Go Science | 9,946 | 70 | | 18 | martinzblavy 74 1534 | Contenders | 9,945 | 68 | | 19 | Timo van&n... 74 52 | Void Crushers | 9,936 | 67 | | 20 | Aubade00 74 1534 | | 9,924 | 65 | | 21 | Flagg65a 74 354 | | 9,920 | 64 | | 22 | Ch Garnier 61 255 | L'Alliance Francophone | 9,917 | 62 | | 23 | enszyme 74 1534 | L'Alliance Francophone | 9,911 | 61 | | 24 | mottiger 74 1534 | Anthropic Dreams | 9,910 | 59 | | 25 | O Seki To 67 289 | Hun-Magyar Csapat | 9,907 | 58 | Need this puzzle? Log in to download.
Comments
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Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=70
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Here is the sequence logo predicted by the SAM server.
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Valines at residues 6, 7, & 10 are highly predicted to be in a helix. However, the Valines at residues 59, 60, 64 & 65 are predicted to be in a sheet.
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Link to template PDBs:
http://www.pdb.org/pdb/explore/explore.do?structureId=3s4k
http://www.pdb.org/pdb/explore/explore.do?structureId=1olp
http://www.pdb.org/pdb/explore/explore.do?structureId=2w9q
http://www.pdb.org/pdb/explore/explore.do?structureId=2e12
http://www.pdb.org/pdb/explore/explore.do?structureId=3e1e
http://www.pdb.org/pdb/explore/explore.do?structureId=1q6w
Keep in mind that it's very likely that ONLY ONE of these templates is close to the native (if we're lucky!)