puzzle picture
552: CASP10 Target T0644
Status: Closed

Groups

RankGroupScorePoints
1Go Science12,339130
2Anthropic Dreams12,337105
3L'Alliance Francophone12,31283
4Contenders12,27866
5foldeRNA12,22852
6Void Crushers12,18140
7Another Hour Another Point12,16531
8Gargleblasters12,00924
9SETI.Germany11,80418
10Russian team11,49213
11FoldIt@Netherlands11,44610
12Nerdfighters11,3847
13Team Hungary11,2965
14Mojo Risin'11,1734
15Androids11,0103
16Freedom Folders10,6702
17Atlanta10,4922
18CHNO Junkies10,4691
19Newton's Cradle10,4611
20Richard Dawkins Foundation10,3881
21E?????! Heureka!10,2481
22Ars Sine Scienta Nihil Est10,1951
23Piratenpartei Deutschland10,1501
24xkcd10,0971
25Team China9,5901


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beta_helix's picture
User offline. Last seen 8 hours 10 min ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP target

Here is the CASP link for this target (which has the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=40&view=all

beta_helix's picture
User offline. Last seen 8 hours 10 min ago. Offline
Joined: 05/09/2008
Groups: None
until the SAM-T08 server comes back...

Here are some other secondary structure predictions (that are sadly not as easy to look at):

H = helix
E = sheet
C = loop (or coil)

The higher the number at the top of each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Phenylalanines at residue 19 & 21 are highly predicted to be part of a helix (an H with a 9 & 8 above it). However, the Phenylalanine at residue 77 is predicted to be in a sheet (an E with a 9 above it).

beta_helix's picture
User offline. Last seen 8 hours 10 min ago. Offline
Joined: 05/09/2008
Groups: None
Here are the secondary structure predictions FINALLY:

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 12, 16, 18 & 99 are highly predicted to be part of a helix. However, the Valines at residues 62, 74, 130-131 & 139 are highly predicted to be in sheets.

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