puzzle picture
536: CASP ROLL Target R0018
Status: Closed


Name: 536: CASP ROLL Target R0018
Status: Closed
Created: 03/31/2012
Points: 130
Expired: 04/10/2012 - 05:00
Difficulty: Intermediate
Description: We are starting you off with server predictions for CASP ROLL target R0018. Resetting the puzzle will cycle through 7 different server predictions (we have filtered out server predictions similar to one another). Please work on each of the 7 server models, not just the one that gets you the most points after a couple days. The other models might get you a better score eventually! The secondary structure predictions are posted in the puzzle comments.
Categories: Overall, Prediction

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1Go Science11,293130
2Anthropic Dreams11,151107
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1smilingone 8 42 Go Science11,212130
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3meatexplosion 82 934 Anthropic Dreams11,149126
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5Galaxie 3 4  11,123121

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beta_helix's picture
User offline. Last seen 1 day 3 hours ago. Offline
Joined: 05/09/2008
Groups: None
Here are the secondary structure predictions:

This puzzle is worth 130 global points!

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residue 9 & 11 are highly predicted to be part of a helix. However, the Leucine at residue 76 is predicted to be in a loop or sheet.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Microsoft, Adobe, RosettaCommons