Multiple partial threading bug (cuts bug)

Case number:699969-991815
Opened by:brow42
Opened on:Friday, February 10, 2012 - 21:02
Last modified:Monday, March 5, 2012 - 19:43

On 513, if I do a partial threading, then do another partial threading from another start without resolving the cuts, the cuts become solid segments 20A long. :)

I'd prefer to keep the cuts active so that I can resolve them all at the same time, or work on the cut pieces while cut, or prioritize.

(Fri, 02/10/2012 - 21:02  |  4 comments)

beta_helix's picture
User offline. Last seen 22 hours 24 min ago. Offline
Joined: 05/09/2008
Groups: None

thank you for finding this bug!

brow42's picture
User offline. Last seen 1 year 36 weeks ago. Offline
Joined: 09/19/2011
Groups: None

News post mentioned that you had fixed a problem with cuts not being formed in threading. This effect is still present: basically, threading creates 2 new cuts, but makes the old cuts solid whether they are yellow or blue. If blue, the backbone is very low scoring and are basically irreparable, although they may eventually wiggle into shape.


infjamc's picture
User offline. Last seen 19 hours 53 min ago. Offline
Joined: 02/20/2009
Groups: Contenders

While this bug definitely needs to be fixed, here's a workaround that might be useful in the meantime:

Simply rebuild the segment containing the over-stretched bonds.

jflat06's picture
User offline. Last seen 19 hours 7 min ago. Offline
Joined: 09/29/2010
Groups: Window Group
Status: Open » Closed

This should be fixed in the next update.


Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons