puzzle picture
487: CASP ROLL Puzzle 1
Status: Closed

Soloists

RankPlayerGroupScorePoints
201christioanchauvin 52 39  10,2364
202spdenne 33 21  10,2204
203youma 140 6839  10,1984
204dfonda 140 6839  10,1954
205Aotearoa 96 208 10,1804
206djag 140 279 Contenders10,1803
207Dsungare 140 6839  10,1663
208bcd 140 614  10,1643
209YGK 140 642  10,1543
210gjblue 140 6839  10,1363
211tjohnson 140 6839 Mmm Helix Fries.10,1323
212carbomol 140 6839 Valencia10,1223
213danielnoonan33 140 6839  10,0973
214georg137 140 321  10,0863
215steamywindow 140 647  10,0663
216XXWhiteKnightXX 140 6839  10,0653
217baxterchem 140 6839  10,0573
218shettler 140 6839  10,0443
219ThomasJReed 140 6839  10,0403
220cpuprocess 140 6839  10,0383
221Arne Heessels 140 259  10,0323
222leprechaun 140 2929 Crunching Family10,0173
223kurofune 140 6839  10,0103
224Silu 140 6839  10,0032
225Sadler 110 439 Russian team10,0022
 

Comments

Joined: 05/09/2008
Groups: None
Please try to use these secondary structure predictions:

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 3 is highly predicted to be part of a sheet. However, the Valine at residue 116 is predicted to be anything.

Freywa's picture
User offline. Last seen 1 year 3 weeks ago. Offline
Joined: 06/25/2011
Groups: Androids
Regarding the W-Y-I sequence at 26-28...

It seems like the placement and identity of the other segments force that sequence to be a loop, rather than a (as predicted by the server to be slightly more likely) sheet.

B_2's picture
User offline. Last seen 23 weeks 5 days ago. Offline
Joined: 11/29/2008
Groups: None
Is this a previously unsolved

Is this a previously unsolved protein, or is this just enhancing a known or previously predicted structure?

I can't tell from the CASP site, since 90% of what's on there is gibberish to a layman.

Joined: 05/09/2008
Groups: None
CASP ROLL just started last week

so these are all blind targets where the natives have not been released yet.
Here is the target list so you can see when the expiration deadlines are: http://predictioncenter.org/casprol/targetlist.cgi

Get Started: Download
  Windows    OSX    Linux  
Windows
(XP/Vista/7)
OSX
(Intel 10.4 or later)
Linux
(64-bit)
Search
Only search fold.it
Recommend Foldit
User login
Soloists
Evolvers
Groups
Topics
Top New Users
Sitemap

Supported by: UW Center for Game Science, UW Department of Computer Science and Engineering, UW Baker Lab, DARPA, NSF, HHMI, Microsoft, and Adobe