I`m pretty sure, that functions which are in standalone are just "hidden" in our version.
There is list of functionality I see can be very useful to us:

- script console
- behavior max set to 2 (looks to me it is not just our 1)

LUA commands:
= info(seg_no) - but it should just return table {{name,value},...} instead of showing info. Faster and easier to manage score parts etc.
= select_sphere(center,radius) <- sic! I have function for that, but there is one already!
= do_focus_segment(seg_no) - very cool for showing what script is doing atm
= boolean confirm(string text) <- it can be changed to our inputbox we want badly!
= show_holes() hide_holes() - looks like it is bit different from voids?

Maybe optional save/load PDBs? It would be very cool to load almost any pdb and watch how it looks like and what we can do to it :)