|Opened on:||Monday, July 4, 2011 - 15:20|
|Last modified:||Wednesday, June 6, 2012 - 20:52|
When running a Quake variety script, the banding of random pieces of the backbone can cause sheets to be pulled apart. Sometimes, the separated sheets after using the wiggle function can score slightly better than the intact sheets; and the script would then choose that conformation as the recent best score. The script then progresses with an incorrect structure.
It would be beneficial to be able to set certain bands as "permanent", meaning that no script can inactivate or delete them, until such time that they are inactivated or deleted, manually. This way, specific sections of the protein will more likely stay in place, while the scripts do their business with the other parts.