Not running so well in Linux

Case number:845829-2009166
Topic:Crash/Hang
Opened by:mistere357
Status:Open
Type:DevPrev Issue
Opened on:Sunday, March 22, 2020 - 13:46
Last modified:Sunday, March 29, 2020 - 04:15

I've had some problems with the Linux version.
Here's the terminal output when I run it:

eric@Jupiter  apps/Foldit  ./Foldit
terminate called after throwing an instance of 'std::logic_error'
what(): basic_string::_S_construct null not valid
[1] 9700 abort (core dumped) ./Foldit
eric@Jupiter  apps/Foldit  ./Foldit
Foldit Error: The game has previously not started up correctly.
If this problem persists, please install the latest version.
AL lib: (EE) ALCplaybackOSS_open: Could not open /dev/dsp: No such file or directory
AL lib: (WW) alcSetError: Error generated on device (nil), code 0xa004
AL lib: (WW) ALCplaybackOSS_open: Could not find "Generic Software" in device list
AL lib: (WW) alcSetError: Error generated on device (nil), code 0xa004

Frequently I will finish one of the test puzzles and it won't show the menu to move to the next puzzle

Here's my brief system info:
Linux Jupiter 5.3.0-40-generic #32~18.04.1-Ubuntu SMP Mon Feb 3 14:05:59 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux

Feel free to reach out to me if you need more info. eric@lucii.org
Thanks

(Sun, 03/22/2020 - 13:46  |  3 comments)


neilpg628's picture
User offline. Last seen 21 hours 26 min ago. Offline
Joined: 08/01/2019
Groups: None

That's interesting. We must be passing a null pointer to a sting constructor.


Do you have a log file or backtrace so we can pinpoint the issue? (There should be one in your Foldit directory)

zo3xia's picture
User offline. Last seen 21 hours 15 min ago. Offline
Joined: 10/10/2015
Groups: None

ubuntu game crashed just once on puzzle 1817: Coronavirus ORF6 Prediction
My log.txt content:

args passed:
'/home/zoe/Documents/hobby/games/Foldit/Foldit'
args used:
'/home/zoe/Documents/hobby/games/Foldit/Foldit'
'-resources'
'cmp-resources-1e8bcb69156e40a1336e1f920fdaa0a0/resources'
'-database'
'cmp-database-fb137240c5d3860cd3853cc25565f8fc/database'
'-interactive_game'
'novice'
'-boinc_url'
'https://fold.it'
'-interactive:interactive_residue_types'
'-ignore_unrecognized_res'
'-out:level'
'200'
'-out:no_color'
'-load_PDB_components'
'false'
Note (not an error): can't open options file options.txt; using defaults.
Can't open hotkey file hotkeys.txt. No default values available. (/home/jflat06/foldit/develop/source/src/interactive/util/options_dict.cc:148)
We're loading in the hotkeys
We loaded in the hotkeys
Can't open options file irc-ignore.txt.
Can't open audio device.
starting the init thread!..
Can't open theme file theme.txt. (/home/jflat06/foldit/develop/source/src/interactive/util/options_dict.cc:95)
boinc base url: https://fold.it
checking updates...
binary
local: 'eec6ab12bbd43985d1600aa86c72ccdf'
remote: 'eec6ab12bbd43985d1600aa86c72ccdf'
database
local: 'fb137240c5d3860cd3853cc25565f8fc'
remote: 'fb137240c5d3860cd3853cc25565f8fc'
resources
local: '1e8bcb69156e40a1336e1f920fdaa0a0'
remote: '1e8bcb69156e40a1336e1f920fdaa0a0'
cleaning up old components:
resources 1e8bcb69156e40a1336e1f920fdaa0a0
resources 00000000000000000000000000000000
database fb137240c5d3860cd3853cc25565f8fc
binary 00000000000000000000000000000000
binary eec6ab12bbd43985d1600aa86c72ccdf
REPORTING CRASH: 769520
SoundTheme::load: cmp-resources-1e8bcb69156e40a1336e1f920fdaa0a0/resources/sounds/organic_01
loading: cmp-resources-1e8bcb69156e40a1336e1f920fdaa0a0/resources/sounds/organic_01/rotamer_land_00.ogg
loading: cmp-resources-1e8bcb69156e40a1336e1f920fdaa0a0/resources/sounds/organic_01/rotamer_land_01.ogg
loading: cmp-resources-1e8bcb69156e40a1336e1f920fdaa0a0/resources/sounds/organic_01/rotamer_land_02.ogg
loading: cmp-resources-1e8bcb69156e40a1336e1f920fdaa0a0/resources/sounds/organic_01/rotamer_land_03.ogg
loading: cmp-resources-1e8bcb69156e40a1336e1f920fdaa0a0/resources/sounds/organic_01/rotamer_land_04.ogg
loading: cmp-resources-1e8bcb69156e40a1336e1f920fdaa0a0/resources/sounds/organic_01/rotamer_land_05.ogg
(@init_machine_log)intro_level_version_ is 0
SVM classifier successfully loaded
Feature list successfully loaded
Valid classifier feature list
REMOTE Local Address 0: 127.0.1.1
buildid: 20190827-32048a6a12-linux_x64
Duplicate hotkey action UNDO_UNDO (, Undo)
Duplicate hotkey action UNDO_REDO (, Redo)
Duplicate hotkey action UNDO_RESTORE_BEST (, Restore Very Best)
about to create view_options_button_
setting side chain mode to: 1 Show Stubs
Playing: sounds/organic_01/splashscreen.ogg
Converting any old-style quicksaves and autosaves...
Sending SOPs:

Sending SOPs:

About to show the puzzle screen...
Trying to get the puzzle list...
Loading cache...
Parsing puzzle URL...
Parsing contests...
Parsing macros...
Saving the cache...
JM level version = 0
Using file: cmp-resources-1e8bcb69156e40a1336e1f920fdaa0a0/resources/levels/puzzles_linear_complex.intros
Parsing level completion...
Sending SOPs:

Initting the list...
Got the puzzles...
Sending SOPs:

Finished show_puzzle_screen...
Sending SOPs:

has key .owts
has key .opdb
has key .opuzzle_setup
starting score : -375.31
puzzle loaded
Autosave puzzles/0002008951/0000769520/default/autosave.ir_solution loaded.
Autosave puzzles/0002008951/0000769520/default/autosave-best.ir_solution loaded.
Autosave puzzles/0002008951/0000769520/default/autosave-recentbest.ir_solution loaded.
Autosave puzzles/0002008951/0000769520/default/autosave-creditbest.ir_solution loaded.
Quicksave puzzles/0002008951/0000769520/default/quicksave.ir_solution loaded.
Quicksave puzzles/0002008951/0000769520/default/quicksave3.ir_solution loaded.
Quicksave puzzles/0002008951/0000769520/default/quicksave4.ir_solution loaded.
Quicksave puzzles/0002008951/0000769520/default/quicksave5.ir_solution loaded.
Autosave puzzles/0002008951/0000769520/default/autosave-best.ir_solution loaded.
Autosave puzzles/0002008951/0000769520/default/autosave-recentbest.ir_solution loaded.
Autosave puzzles/0002008951/0000769520/default/autosave-creditbest.ir_solution loaded.
Autosave puzzles/0002008951/0000769520/default/autosave-best.ir_solution loaded.
Autosave puzzles/0002008951/0000769520/default/autosave-recentbest.ir_solution loaded.
Autosave puzzles/0002008951/0000769520/default/autosave-creditbest.ir_solution loaded.
building library...done.
clear density...
ScorePanel new session
SRVR_THRD getting notifications...
BOINC says connect to: irc.fold.it:6667
Using nick: zo3xia
Initting IRC mappings...
Error: not connected to IRC when init happened.
Ended Initialization of GameApplication
Entering IRC::run
Sending SOPs:

Notice : This nickname is registered and protected. If it is your
Notice : nick, type /msg NickServ IDENTIFY password. Otherwise,
Notice : please choose a different nick.
Notice : Password accepted - you are now recognized.
IDENTIFIED
Sending message to FolditIRCBot: infoplz #global
Sending message to FolditIRCBot: infoplz #veteran
Initting IRC mappings...
Sending message to FolditIRCBot: vet=t
Sending SOPs:

Sending SOPs:

Sending SOPs:

Sending SOPs:

Sending SOPs:

Sending SOPs:

Sending SOPs:

Sending SOPs:

Sending SOPs:

Sending SOPs:

SRVR_THRD getting notifications...
Sending SOPs:

Sending SOPs:

Sending SOPs:

Sending SOPs:

Sending SOPs:

downloading: http://fold.it/portal/files/puzzle_pdb/puzzle_post_1959.zip
has key .owts
has key .opdb
has key .opuzzle_setup
starting score : 290.912
puzzle loaded
clear density...
ScorePanel new session
Sending SOPs:

Sending SOPs:

Time: 517.091 - Tool on_action_complete called
Sending SOPs:

Time: 517.137 - Tool on_action_complete called
Time: 520.48 - Tool on_action_complete called
Time: 520.481 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111110000111111111111111111111111111111111111
SRVR_THRD getting notifications...
Sending SOPs:

***** ENDING THREAD ActionRebuild
Time: 524.753 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionRepackDesign
Time: 528.368 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 7, adding dofs.
Unideality at position 8, adding dofs.
Unideality at position 9, adding dofs.
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 532.598 - Tool on_action_complete called
Time: 532.674 - Tool on_action_complete called
Time: 532.676 - Tool on_action_complete called
Time: 532.719 - Tool on_action_complete called
Time: 532.749 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
Sending SOPs:

***** ENDING THREAD ActionGlobalMinimize
Time: 536.195 - Tool on_action_complete called
Time: 536.277 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionRepackDesign
Time: 540.069 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 542.898 - Tool on_action_complete called
Time: 543.041 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 548.19 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 553.16 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 558.394 - Tool on_action_complete called
Time: 558.486 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 558.609 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 561.867 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 562.884 - Tool on_action_complete called
Time: 562.945 - Tool on_action_complete called
Time: 562.988 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111100001111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 569.499 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 573.329 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 576.938 - Tool on_action_complete called
Time: 577.057 - Tool on_action_complete called
Time: 577.08 - Tool on_action_complete called
Time: 577.135 - Tool on_action_complete called
Time: 577.197 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 581.019 - Tool on_action_complete called
Time: 581.111 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 584.514 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 585.86 - Tool on_action_complete called
Time: 586.028 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 591.412 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 597.008 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 600.834 - Tool on_action_complete called
Time: 600.954 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 601.286 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 605.61 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 607.963 - Tool on_action_complete called
Time: 608.071 - Tool on_action_complete called
Time: 608.133 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111110000111111111111
***** ENDING THREAD ActionRebuild
Time: 613.192 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 617.289 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 622.342 - Tool on_action_complete called
Time: 622.454 - Tool on_action_complete called
Time: 622.48 - Tool on_action_complete called
Time: 622.533 - Tool on_action_complete called
Time: 622.599 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 625.81 - Tool on_action_complete called
Time: 625.903 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 630.162 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 631.673 - Tool on_action_complete called
Time: 631.806 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 635.49 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 639.894 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 643.494 - Tool on_action_complete called
Time: 643.627 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 643.805 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 647.169 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 649.855 - Tool on_action_complete called
Time: 649.973 - Tool on_action_complete called
Time: 650.025 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 110000111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 654.02 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 657.314 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 662.143 - Tool on_action_complete called
Time: 662.242 - Tool on_action_complete called
Time: 662.321 - Tool on_action_complete called
Time: 662.35 - Tool on_action_complete called
Time: 662.413 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 664.58 - Tool on_action_complete called
Time: 664.683 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 668.861 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 670.002 - Tool on_action_complete called
Time: 670.124 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 673.103 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 678.247 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 682.889 - Tool on_action_complete called
Time: 683.01 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 683.168 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 687.05 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 689.602 - Tool on_action_complete called
Time: 689.69 - Tool on_action_complete called
Time: 689.789 - Tool on_action_complete called
Time: 689.968 - Tool on_action_complete called
Time: 690.153 - Tool on_action_complete called
Time: 690.184 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 690.323 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 694.61 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 699.727 - Tool on_action_complete called
Time: 699.843 - Tool on_action_complete called
Time: 699.877 - Tool on_action_complete called
Time: 699.912 - Tool on_action_complete called
Time: 699.973 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 704.99 - Tool on_action_complete called
Time: 705.092 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 709.622 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 713.106 - Tool on_action_complete called
Time: 713.2 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 716.062 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 721.475 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 725.25 - Tool on_action_complete called
Time: 725.373 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111000011111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 738.491 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 742.39 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 17, adding dofs.
Unideality at position 18, adding dofs.
Unideality at position 19, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 747.987 - Tool on_action_complete called
Time: 748.084 - Tool on_action_complete called
Time: 748.152 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 748.331 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionRepackDesign
Time: 752.84 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 754.175 - Tool on_action_complete called
Time: 754.276 - Tool on_action_complete called
Time: 754.303 - Tool on_action_complete called
Time: 754.366 - Tool on_action_complete called
Time: 754.429 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionGlobalMinimize
Time: 760.199 - Tool on_action_complete called
Time: 760.394 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 764.968 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
SRVR_THRD getting notifications...
***** ENDING THREAD ActionGlobalMinimize
Time: 769.232 - Tool on_action_complete called
Time: 769.376 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 773.023 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 777.48 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 781.288 - Tool on_action_complete called
Time: 781.401 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111100001111111111111
***** ENDING THREAD ActionRebuild
Time: 787.858 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 792.72 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 29, adding dofs.
Sending SOPs:

***** ENDING THREAD ActionGlobalMinimize
Time: 798.148 - Tool on_action_complete called
Time: 798.254 - Tool on_action_complete called
Time: 798.351 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 798.574 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 802.847 - Tool on_action_complete called
Sending SOPs:

***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 806.015 - Tool on_action_complete called
Time: 806.194 - Tool on_action_complete called
Time: 806.235 - Tool on_action_complete called
Time: 806.268 - Tool on_action_complete called
Time: 806.334 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionGlobalMinimize
Time: 810.462 - Tool on_action_complete called
Time: 810.547 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionRepackDesign
Time: 814.891 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 817.707 - Tool on_action_complete called
Time: 817.906 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionGlobalMinimize
Time: 820.511 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 824.917 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 827.257 - Tool on_action_complete called
Time: 827.371 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111000011111111
***** ENDING THREAD ActionRebuild
Time: 830.043 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 834.715 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 840.112 - Tool on_action_complete called
Time: 840.204 - Tool on_action_complete called
Time: 840.281 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 840.596 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 846.772 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 848.203 - Tool on_action_complete called
Time: 848.345 - Tool on_action_complete called
Time: 848.411 - Tool on_action_complete called
Time: 848.474 - Tool on_action_complete called
Time: 848.543 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 851.896 - Tool on_action_complete called
Time: 851.966 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 855.738 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 858.658 - Tool on_action_complete called
Time: 858.732 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 861.395 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 865.508 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 867.656 - Tool on_action_complete called
Time: 867.74 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111110000111111111111
***** ENDING THREAD ActionRebuild
Time: 876.323 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 880.252 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 31, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 886.228 - Tool on_action_complete called
Time: 886.328 - Tool on_action_complete called
Time: 886.377 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 886.712 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 891.339 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 895.002 - Tool on_action_complete called
Time: 895.215 - Tool on_action_complete called
Time: 895.241 - Tool on_action_complete called
Time: 895.297 - Tool on_action_complete called
Time: 895.357 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 898.921 - Tool on_action_complete called
Time: 899.012 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 902.824 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 905.208 - Tool on_action_complete called
Time: 905.327 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 907.96 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 912.517 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 914.801 - Tool on_action_complete called
Time: 914.898 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111110000111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 917.15 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 921.409 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 923.533 - Tool on_action_complete called
Time: 923.59 - Tool on_action_complete called
Time: 923.64 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 923.784 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 928.018 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 930.746 - Tool on_action_complete called
Time: 930.852 - Tool on_action_complete called
Time: 930.887 - Tool on_action_complete called
Time: 930.922 - Tool on_action_complete called
Time: 930.978 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 934.328 - Tool on_action_complete called
Time: 934.487 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 937.848 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 940.122 - Tool on_action_complete called
Time: 940.243 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 942.354 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 946.839 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 948.835 - Tool on_action_complete called
Time: 948.913 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111111100001111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 953.093 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 957.018 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 39, adding dofs.
Unideality at position 40, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 961.68 - Tool on_action_complete called
Time: 961.777 - Tool on_action_complete called
Time: 961.826 - Tool on_action_complete called
Time: 961.893 - Tool on_action_complete called
Time: 962.003 - Tool on_action_complete called
Time: 962.004 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 967.128 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111100001111111
***** ENDING THREAD ActionRebuild
Time: 969.695 - Tool on_action_complete called
Time: 970.955 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111110000111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 973.734 - Tool on_action_complete called
Time: 974.391 - Tool on_action_complete called
Time: 974.425 - Tool on_action_complete called
Time: 974.453 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111100001111111111
***** ENDING THREAD ActionRebuild
Time: 979.161 - Tool on_action_complete called
Time: 979.882 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 984.653 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 988.48 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 988.679 - Tool on_action_complete called
Time: 988.757 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 988.872 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 993.821 - Tool on_action_complete called
Time: 993.95 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionRepackDesign
Time: 998.456 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111110000111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1003.1 - Tool on_action_complete called
Time: 1003.36 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1007.05 - Tool on_action_complete called
Time: 1007.29 - Tool on_action_complete called
Time: 1007.32 - Tool on_action_complete called
Time: 1007.42 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111100001111111111111111
SRVR_THRD getting notifications...
***** ENDING THREAD ActionRebuild
Time: 1024.07 - Tool on_action_complete called
Time: 1025.66 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1028.14 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1029.23 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1029.46 - Tool on_action_complete called
Time: 1029.59 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1029.96 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1034.88 - Tool on_action_complete called
Time: 1034.99 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1040.96 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111100001111111
***** ENDING THREAD ActionRebuild
Time: 1050.85 - Tool on_action_complete called
Time: 1051.08 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111110000111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1060.6 - Tool on_action_complete called
Time: 1061.86 - Tool on_action_complete called
Time: 1061.89 - Tool on_action_complete called
Time: 1061.96 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111100001111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1065.35 - Tool on_action_complete called
Time: 1067.51 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1068.91 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1070.28 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1070.58 - Tool on_action_complete called
Time: 1070.71 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1071.08 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1077.06 - Tool on_action_complete called
Time: 1077.21 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1082.94 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111110000111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1085.44 - Tool on_action_complete called
Time: 1086.94 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111110000111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1094.16 - Tool on_action_complete called
Time: 1095.71 - Tool on_action_complete called
Time: 1095.75 - Tool on_action_complete called
Time: 1095.82 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111100001111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1098.28 - Tool on_action_complete called
Time: 1100.2 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1101.96 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1103.48 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1103.7 - Tool on_action_complete called
Time: 1103.93 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1104.26 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1109.61 - Tool on_action_complete called
Time: 1109.69 - Tool on_action_complete called
Time: 1110.11 - Tool on_action_complete called
Time: 1110.11 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1116.23 - Tool on_action_complete called
Time: 1116.37 - Tool on_action_complete called
Time: 1116.41 - Tool on_action_complete called
Time: 1116.49 - Tool on_action_complete called
Time: 1116.62 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111000001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1129.45 - Tool on_action_complete called
Time: 1129.95 - Tool on_action_complete called
Time: 1129.98 - Tool on_action_complete called
Time: 1130.01 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1132.62 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111100001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1136.82 - Tool on_action_complete called
Time: 1137.9 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111110000111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1140.49 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 12, adding dofs.
Unideality at position 13, adding dofs.
Unideality at position 15, adding dofs.
Unideality at position 16, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1147.88 - Tool on_action_complete called
Time: 1147.99 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1153.36 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111000011111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1161.04 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111100000111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1163.83 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1164.32 - Tool on_action_complete called
Time: 1164.41 - Tool on_action_complete called
Time: 1164.44 - Tool on_action_complete called
Time: 1164.48 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1168.71 - Tool on_action_complete called
Time: 1168.79 - Tool on_action_complete called
Time: 1168.79 - Tool on_action_complete called
Time: 1168.82 - Tool on_action_complete called
Time: 1168.87 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111110000111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1171.98 - Tool on_action_complete called
Time: 1172.12 - Tool on_action_complete called
Time: 1172.15 - Tool on_action_complete called
Time: 1172.19 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1176.4 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111110000111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1178.76 - Tool on_action_complete called
Time: 1180.16 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111110000111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1182.67 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1190.16 - Tool on_action_complete called
Time: 1190.26 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1194.52 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111000001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1203.02 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111100001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1218.49 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1219.37 - Tool on_action_complete called
Time: 1219.54 - Tool on_action_complete called
Time: 1219.8 - Tool on_action_complete called
Time: 1219.87 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionRepackDesign
Time: 1223.95 - Tool on_action_complete called
Time: 1224.05 - Tool on_action_complete called
Time: 1224.09 - Tool on_action_complete called
Time: 1224.12 - Tool on_action_complete called
Time: 1224.17 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111100001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1227.28 - Tool on_action_complete called
Time: 1227.88 - Tool on_action_complete called
Time: 1227.91 - Tool on_action_complete called
Time: 1227.97 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1233.18 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111000001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1237.07 - Tool on_action_complete called
Time: 1237.75 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111111100001111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
Sending SOPs:

core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 1240.43 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 38, adding dofs.
Unideality at position 39, adding dofs.
Unideality at position 40, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1246.9 - Tool on_action_complete called
Time: 1246.98 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1253.22 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111100011111111111111111111
SRVR_THRD getting notifications...
***** ENDING THREAD ActionRebuild
Time: 1265.24 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111100011111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1272.78 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1273.49 - Tool on_action_complete called
Time: 1273.63 - Tool on_action_complete called
Time: 1273.71 - Tool on_action_complete called
Time: 1273.78 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1277.97 - Tool on_action_complete called
Time: 1278.03 - Tool on_action_complete called
Time: 1278.13 - Tool on_action_complete called
Time: 1278.22 - Tool on_action_complete called
Time: 1278.27 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111110000111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1281.09 - Tool on_action_complete called
Time: 1281.74 - Tool on_action_complete called
Time: 1281.8 - Tool on_action_complete called
Time: 1281.89 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1286.45 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111100001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1298.28 - Tool on_action_complete called
Time: 1299.88 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111000011111111111111111
***** ENDING THREAD ActionRebuild
Time: 1302.25 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1309.09 - Tool on_action_complete called
Time: 1309.21 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1315.94 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111000011111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1326.9 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111100001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1332.04 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1333.92 - Tool on_action_complete called
Time: 1334.04 - Tool on_action_complete called
Time: 1334.14 - Tool on_action_complete called
Time: 1334.22 - Tool on_action_complete called
Time: 1334.42 - Tool on_action_complete called
Time: 1334.46 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111110000111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1345.98 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1346.43 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 9, adding dofs.
Unideality at position 10, adding dofs.
Unideality at position 15, adding dofs.
Unideality at position 16, adding dofs.
Unideality at position 17, adding dofs.
Unideality at position 18, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1349.73 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111000011111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1361.01 - Tool on_action_complete called
Time: 1361.42 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 110000111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1364.46 - Tool on_action_complete called
Time: 1365.12 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111000111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1370.55 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 9, adding dofs.
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1378.16 - Tool on_action_complete called
Time: 1378.3 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1378.5 - Tool on_action_complete called
Time: 1378.63 - Tool on_action_complete called
Time: 1378.66 - Tool on_action_complete called
Time: 1378.71 - Tool on_action_complete called
Time: 1378.77 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1383.93 - Tool on_action_complete called
Time: 1384.04 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111000001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1386.4 - Tool on_action_complete called
Time: 1386.98 - Tool on_action_complete called
Time: 1387.05 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111100001111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1394.63 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1396.24 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1403.53 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111000001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1414.45 - Tool on_action_complete called
Time: 1414.88 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111000011111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1418.7 - Tool on_action_complete called
Time: 1419.2 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111110001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1427.12 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1431.78 - Tool on_action_complete called
Time: 1431.86 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1432.2 - Tool on_action_complete called
Time: 1432.28 - Tool on_action_complete called
Time: 1432.31 - Tool on_action_complete called
Time: 1432.34 - Tool on_action_complete called
Time: 1432.43 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1436.47 - Tool on_action_complete called
Time: 1436.55 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 100011111111111111111111111111111111111111111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 1442.32 - Tool on_action_complete called
Time: 1442.66 - Tool on_action_complete called
Time: 1442.73 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111100001111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1450.05 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1450.34 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1455.81 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111110001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1458.63 - Tool on_action_complete called
Time: 1458.93 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111000011111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1468.63 - Tool on_action_complete called
Time: 1469.46 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111110000111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1472.1 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 9, adding dofs.
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1477.2 - Tool on_action_complete called
Time: 1477.28 - Tool on_action_complete called
Sending SOPs:

***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1477.68 - Tool on_action_complete called
Time: 1477.81 - Tool on_action_complete called
Time: 1477.84 - Tool on_action_complete called
Time: 1477.92 - Tool on_action_complete called
Time: 1477.99 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1480.6 - Tool on_action_complete called
Time: 1480.7 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 100011111111111111111111111111111111111111111
Sending SOPs:

core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 1492.19 - Tool on_action_complete called
Time: 1492.92 - Tool on_action_complete called
Time: 1493.02 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 110000111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1497.47 - Tool on_action_complete called
SRVR_THRD getting notifications...
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1498.88 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1504.54 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111110001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1509.3 - Tool on_action_complete called
Time: 1509.94 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111110000111111111
***** ENDING THREAD ActionRebuild
Time: 1513.23 - Tool on_action_complete called
Time: 1513.76 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111100001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1523.15 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 9, adding dofs.
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1528.93 - Tool on_action_complete called
Time: 1529.04 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1529.31 - Tool on_action_complete called
Time: 1529.39 - Tool on_action_complete called
Time: 1529.42 - Tool on_action_complete called
Time: 1529.48 - Tool on_action_complete called
Time: 1529.53 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1533.71 - Tool on_action_complete called
Time: 1533.78 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111110000111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1541.27 - Tool on_action_complete called
Time: 1541.73 - Tool on_action_complete called
Time: 1541.81 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111111110000111
***** ENDING THREAD ActionRebuild
Time: 1551.5 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1551.86 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1555.67 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111100000111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1560.3 - Tool on_action_complete called
Time: 1560.76 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111000011111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1571.1 - Tool on_action_complete called
Time: 1571.8 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1574.15 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1581.45 - Tool on_action_complete called
Time: 1581.59 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1581.86 - Tool on_action_complete called
Time: 1581.99 - Tool on_action_complete called
Time: 1582.02 - Tool on_action_complete called
Time: 1582.11 - Tool on_action_complete called
Time: 1582.19 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1587.6 - Tool on_action_complete called
Time: 1587.7 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111111110001111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 1591.41 - Tool on_action_complete called
Time: 1591.84 - Tool on_action_complete called
Time: 1591.91 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111100001111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1601.33 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1601.86 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 6, adding dofs.
Unideality at position 7, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1606.39 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111100000111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1610.4 - Tool on_action_complete called
Time: 1610.69 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111100001111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1620.99 - Tool on_action_complete called
Time: 1621.41 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 100011111111111111111111111111111111111111111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 1628.31 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1632.73 - Tool on_action_complete called
Time: 1632.87 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1633.03 - Tool on_action_complete called
Time: 1633.15 - Tool on_action_complete called
Time: 1633.18 - Tool on_action_complete called
Time: 1633.24 - Tool on_action_complete called
Time: 1633.3 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1637.84 - Tool on_action_complete called
Time: 1637.92 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000111111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1640.12 - Tool on_action_complete called
Time: 1640.61 - Tool on_action_complete called
Time: 1640.67 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111000011111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1643.16 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1643.44 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Sending message to FolditIRCBot: afk
***** ENDING THREAD ActionGlobalMinimize
Time: 1647.16 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1649.48 - Tool on_action_complete called
Time: 1650.04 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111000011111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1655.86 - Tool on_action_complete called
Time: 1656.15 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1658.12 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1663.25 - Tool on_action_complete called
Time: 1663.37 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1663.57 - Tool on_action_complete called
Time: 1663.69 - Tool on_action_complete called
Time: 1663.72 - Tool on_action_complete called
Time: 1663.78 - Tool on_action_complete called
Time: 1663.85 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1668.37 - Tool on_action_complete called
Time: 1668.46 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000111111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1672.17 - Tool on_action_complete called
Time: 1672.75 - Tool on_action_complete called
Time: 1672.8 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111000011111111111111
***** ENDING THREAD ActionRebuild
Time: 1676.77 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1677.21 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1681.25 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1683.29 - Tool on_action_complete called
Time: 1683.67 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111110000111111111111111111111111
Sending message to FolditIRCBot: afkback
***** ENDING THREAD ActionRebuild
Time: 1687.61 - Tool on_action_complete called
Time: 1687.8 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000111111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1690.19 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1693.19 - Tool on_action_complete called
Time: 1693.28 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1693.49 - Tool on_action_complete called
Time: 1693.57 - Tool on_action_complete called
Time: 1693.65 - Tool on_action_complete called
Time: 1693.72 - Tool on_action_complete called
Time: 1693.78 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1697.01 - Tool on_action_complete called
Time: 1697.1 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111111100001111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 1699.89 - Tool on_action_complete called
Time: 1700.21 - Tool on_action_complete called
Time: 1700.26 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111000011111111111111
***** ENDING THREAD ActionRebuild
Time: 1709.03 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1710.04 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1715.43 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1717.58 - Tool on_action_complete called
Time: 1718 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111110000111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionRebuild
Time: 1728.51 - Tool on_action_complete called
Time: 1728.95 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111111110001111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 1733.35 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 40, adding dofs.
Unideality at position 41, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1737.02 - Tool on_action_complete called
Time: 1737.09 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1737.22 - Tool on_action_complete called
Time: 1737.29 - Tool on_action_complete called
Time: 1737.29 - Tool on_action_complete called
Time: 1737.32 - Tool on_action_complete called
Time: 1737.36 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1740.38 - Tool on_action_complete called
Time: 1740.48 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111100000111111111111111111111111111111111
SRVR_THRD getting notifications...
***** ENDING THREAD ActionRebuild
Time: 1752.26 - Tool on_action_complete called
Time: 1753.1 - Tool on_action_complete called
Time: 1753.19 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111110000111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1757.38 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1758.22 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1763.44 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 100011111111111111111111111111111111111111111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 1771.14 - Tool on_action_complete called
Time: 1771.46 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111000011111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1779.46 - Tool on_action_complete called
Time: 1780.21 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1783.48 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1788.19 - Tool on_action_complete called
Time: 1788.31 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1788.5 - Tool on_action_complete called
Time: 1788.57 - Tool on_action_complete called
Time: 1788.6 - Tool on_action_complete called
Time: 1788.63 - Tool on_action_complete called
Time: 1788.7 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1792.67 - Tool on_action_complete called
Time: 1792.77 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1794.89 - Tool on_action_complete called
Time: 1795.46 - Tool on_action_complete called
Time: 1795.53 - Tool on_action_complete called
Time: 1795.8 - Tool on_action_complete called
Time: 1795.8 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1795.96 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 100001111111111111111111111111111111111111111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 1803.21 - Tool on_action_complete called
Time: 1803.61 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111110000111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1806.01 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 4, adding dofs.
Unideality at position 5, adding dofs.
Unideality at position 6, adding dofs.
Unideality at position 9, adding dofs.
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1812.8 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1818.74 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1824.89 - Tool on_action_complete called
Time: 1825 - Tool on_action_complete called
Time: 1825.04 - Tool on_action_complete called
Time: 1825.12 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1831.77 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1833.13 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111000001111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1840.16 - Tool on_action_complete called
Time: 1841.49 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111000011111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1845 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1852.06 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111000011111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1856.01 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 12, adding dofs.
Unideality at position 13, adding dofs.
Unideality at position 14, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1864.07 - Tool on_action_complete called
Time: 1864.17 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1864.48 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111110000111111
***** ENDING THREAD ActionRebuild
Time: 1869.66 - Tool on_action_complete called
Time: 1870.17 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111111000111111
***** ENDING THREAD ActionRebuild
Time: 1878.09 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1884.56 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1889.23 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1894.64 - Tool on_action_complete called
Time: 1894.7 - Tool on_action_complete called
Time: 1894.75 - Tool on_action_complete called
Time: 1894.82 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1900.12 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1906.22 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111100001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1910.64 - Tool on_action_complete called
Time: 1910.9 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111000011111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1912.95 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1918.11 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111100011111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 1933.04 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 9, adding dofs.
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1940.74 - Tool on_action_complete called
Time: 1940.93 - Tool on_action_complete called
Time: 1941.28 - Tool on_action_complete called
Time: 1941.33 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 9, adding dofs.
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1946.82 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 1951.09 - Tool on_action_complete called
Time: 1951.32 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1955.59 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 1956.72 - Tool on_action_complete called
Time: 1956.93 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111000011111111111
***** ENDING THREAD ActionRebuild
Time: 1965.85 - Tool on_action_complete called
Time: 1966.48 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111000001111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionRebuild
Time: 1977.46 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 7, adding dofs.
Unideality at position 8, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1982.99 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111000011111111111111
SRVR_THRD getting notifications...
***** ENDING THREAD ActionRebuild
Time: 1987.31 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 1987.87 - Tool on_action_complete called
Time: 1988.01 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111110000111111111111111
***** ENDING THREAD ActionRebuild
Time: 1990.82 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 28, adding dofs.
Unideality at position 29, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 1996.58 - Tool on_action_complete called
Time: 1996.69 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111100011111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2006.05 - Tool on_action_complete called
Time: 2006.83 - Tool on_action_complete called
Time: 2006.9 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2008.19 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2012.37 - Tool on_action_complete called
Time: 2012.54 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2015.05 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2016.44 - Tool on_action_complete called
Time: 2016.61 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111000011111111111111111
***** ENDING THREAD ActionRebuild
Time: 2024.76 - Tool on_action_complete called
Time: 2025.13 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2027.72 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2031.54 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111110000111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2036.99 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 2037.25 - Tool on_action_complete called
Time: 2037.35 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111100001111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2040.13 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2046.55 - Tool on_action_complete called
Time: 2046.71 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 100011111111111111111111111111111111111111111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 2049.59 - Tool on_action_complete called
Time: 2050.61 - Tool on_action_complete called
Time: 2050.68 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2052.04 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2055.48 - Tool on_action_complete called
Time: 2055.69 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2056.98 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2058.08 - Tool on_action_complete called
Time: 2058.21 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111000011111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2060.72 - Tool on_action_complete called
Time: 2061.26 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111111110001111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 2067.28 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 40, adding dofs.
Unideality at position 41, adding dofs.
Unideality at position 42, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 2072.33 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111000011111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2078.23 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 2078.99 - Tool on_action_complete called
Time: 2079.11 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111100001111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2082.06 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 17, adding dofs.
Unideality at position 18, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 2086.52 - Tool on_action_complete called
Time: 2086.61 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111000001111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2094.16 - Tool on_action_complete called
Time: 2094.8 - Tool on_action_complete called
Time: 2094.88 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2095.77 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2098.65 - Tool on_action_complete called
Time: 2098.86 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2099.6 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2100.39 - Tool on_action_complete called
Time: 2100.48 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111110000111111
***** ENDING THREAD ActionRebuild
Time: 2102.96 - Tool on_action_complete called
Time: 2103.8 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2106.41 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2111.28 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111100001111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2114.44 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 2115 - Tool on_action_complete called
Time: 2115.16 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 100011111111111111111111111111111111111111111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 2119.58 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 2, adding dofs.
Unideality at position 3, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 2125.35 - Tool on_action_complete called
Time: 2125.44 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2127.81 - Tool on_action_complete called
Time: 2128.32 - Tool on_action_complete called
Time: 2128.43 - Tool on_action_complete called
Time: 2128.76 - Tool on_action_complete called
Time: 2128.76 - Tool on_action_complete called
Time: 2128.86 - Tool on_action_complete called
Time: 2128.91 - Tool on_action_complete called
Time: 2129 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2133.88 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111110000111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2149.28 - Tool on_action_complete called
Time: 2150.81 - Tool on_action_complete called
Time: 2150.84 - Tool on_action_complete called
Time: 2150.87 - Tool on_action_complete called
Time: 2150.93 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2156.27 - Tool on_action_complete called
Time: 2156.37 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2160.34 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2165.63 - Tool on_action_complete called
Time: 2165.71 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2166.73 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2170.87 - Tool on_action_complete called
Time: 2171.01 - Tool on_action_complete called
Time: 2171.08 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111000011111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2173.18 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111110000111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2184.98 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 6, adding dofs.
Unideality at position 7, adding dofs.
Unideality at position 8, adding dofs.
Unideality at position 9, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 2189.72 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111110000111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2192.72 - Tool on_action_complete called
Time: 2193.29 - Tool on_action_complete called
Time: 2193.39 - Tool on_action_complete called
Time: 2193.42 - Tool on_action_complete called
Time: 2193.5 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2197.23 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 100011111111111111111111111111111111111111111
Sending SOPs:

core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 2205.96 - Tool on_action_complete called
Time: 2207.22 - Tool on_action_complete called
Time: 2207.24 - Tool on_action_complete called
Time: 2207.27 - Tool on_action_complete called
Time: 2207.38 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2213.3 - Tool on_action_complete called
Time: 2213.4 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
Sending SOPs:

RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2217.8 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2222.54 - Tool on_action_complete called
Time: 2222.65 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2223.89 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2228.13 - Tool on_action_complete called
Time: 2228.34 - Tool on_action_complete called
Time: 2228.45 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111111110000111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
SRVR_THRD getting notifications...
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 2230.52 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111000011111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2234.27 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2238.89 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2241.67 - Tool on_action_complete called
Time: 2242.71 - Tool on_action_complete called
Time: 2242.84 - Tool on_action_complete called
Time: 2242.89 - Tool on_action_complete called
Time: 2243.01 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2247.94 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 100011111111111111111111111111111111111111111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 2250.5 - Tool on_action_complete called
Time: 2251.68 - Tool on_action_complete called
Time: 2251.71 - Tool on_action_complete called
Time: 2251.77 - Tool on_action_complete called
Time: 2251.87 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2257.72 - Tool on_action_complete called
Time: 2257.8 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2261.61 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2266.13 - Tool on_action_complete called
Time: 2266.23 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2267.32 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2271.12 - Tool on_action_complete called
Time: 2271.27 - Tool on_action_complete called
Time: 2271.34 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111110000111111111
***** ENDING THREAD ActionRebuild
Time: 2273.83 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111111000011111
***** ENDING THREAD ActionRebuild
Time: 2278.4 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 39, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 2284.42 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111111000001111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 2287.12 - Tool on_action_complete called
Time: 2287.71 - Tool on_action_complete called
Time: 2287.76 - Tool on_action_complete called
Time: 2287.82 - Tool on_action_complete called
Time: 2287.88 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2292.8 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 000011111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2296.32 - Tool on_action_complete called
Time: 2297 - Tool on_action_complete called
Time: 2297 - Tool on_action_complete called
Time: 2297.06 - Tool on_action_complete called
Time: 2297.19 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2303.83 - Tool on_action_complete called
Time: 2303.92 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2308.69 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2311.93 - Tool on_action_complete called
Time: 2312.05 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2313.24 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2317.68 - Tool on_action_complete called
Private message : message t1585453980.9024 7e747b377c751f0b9da99096bdf2b252 macro 21216
download macro: 21216
Time: 2317.81 - Tool on_action_complete called
Time: 2317.9 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 100001111111111111111111111111111111111111111
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 4. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 4 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
Time: 2326.12 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111100001111111
***** ENDING THREAD ActionRebuild
Time: 2330.38 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 5, adding dofs.
Unideality at position 6, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 2335.87 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111000111111111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2338.1 - Tool on_action_complete called
Time: 2338.52 - Tool on_action_complete called
Time: 2338.61 - Tool on_action_complete called
Time: 2338.64 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2342.85 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111100001111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2345.93 - Tool on_action_complete called
Time: 2347.39 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111110001111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2350.77 - Tool on_action_complete called
Time: 2353.34 - Tool on_action_complete called
Time: 2353.4 - Tool on_action_complete called
Time: 2353.52 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111100001111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2360.15 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 14, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 2368.5 - Tool on_action_complete called
Time: 2368.52 - Tool on_action_complete called
Time: 2368.59 - Tool on_action_complete called
Time: 2368.63 - Tool on_action_complete called
Time: 2368.68 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 2368.89 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2375.78 - Tool on_action_complete called
Time: 2375.84 - Tool on_action_complete called
Time: 2375.89 - Tool on_action_complete called
Time: 2376.01 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2379.54 - Tool on_action_complete called
Time: 2379.65 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2384.74 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111100001111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2388.72 - Tool on_action_complete called
Time: 2390.35 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111110000111111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2395.05 - Tool on_action_complete called
Time: 2396.05 - Tool on_action_complete called
Time: 2396.12 - Tool on_action_complete called
Time: 2396.22 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111111111111111111111111111111111100001
***** ENDING THREAD ActionRebuild
Time: 2398.57 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
Unideality at position 11, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 2405.26 - Tool on_action_complete called
Time: 2405.34 - Tool on_action_complete called
Time: 2405.39 - Tool on_action_complete called
Time: 2405.47 - Tool on_action_complete called
Time: 2405.57 - Tool on_action_complete called
***** STARTING THREAD ActionIdealize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionIdealize
Time: 2405.84 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2412.18 - Tool on_action_complete called
Time: 2412.23 - Tool on_action_complete called
Time: 2412.26 - Tool on_action_complete called
Time: 2412.4 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2416.84 - Tool on_action_complete called
Time: 2416.96 - Tool on_action_complete called
***** STARTING THREAD ActionRepackDesign
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepackDesign
Time: 2421.7 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111111100001111111111111111111111111111111
***** ENDING THREAD ActionRebuild
Time: 2423.95 - Tool on_action_complete called
Time: 2425.31 - Tool on_action_complete called
***** STARTING THREAD ActionRebuild
RT: 111111100000111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionRebuild
Time: 2431.65 - Tool on_action_complete called
Time: 2432.23 - Tool on_action_complete called
Sending SOPs:

Sending SOPs:

Sending SOPs:

Sending SOPs:

Time: 2449.86 - Tool on_action_complete called
Time: 2449.87 - Tool on_action_complete called
Time: 2451.33 - Tool on_action_complete called
Time: 2451.39 - Tool on_action_complete called
Time: 2451.42 - Tool on_action_complete called
Time: 2451.69 - Tool on_action_complete called
Time: 2451.88 - Tool on_action_complete called
Time: 2452.02 - Tool on_action_complete called
Time: 2452.22 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
Unideality at position 11, adding dofs.
Sending SOPs:

***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2456.49 - Tool on_action_complete called
Time: 2456.6 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionGlobalMinimize
Time: 2461.05 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2461.91 - Tool on_action_complete called
Time: 2462.01 - Tool on_action_complete called
Time: 2462.08 - Tool on_action_complete called
Time: 2462.22 - Tool on_action_complete called
Time: 2462.29 - Tool on_action_complete called
Time: 2462.38 - Tool on_action_complete called
Time: 2462.42 - Tool on_action_complete called
Time: 2462.54 - Tool on_action_complete called
Time: 2462.62 - Tool on_action_complete called
Time: 2462.68 - Tool on_action_complete called
Time: 2462.74 - Tool on_action_complete called
Time: 2462.87 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2465.75 - Tool on_action_complete called
Time: 2465.88 - Tool on_action_complete called
***** STARTING THREAD ActionRepack
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepack
Time: 2470.83 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
SRVR_THRD getting notifications...
***** ENDING THREAD ActionGlobalMinimize
Time: 2475.01 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2475.95 - Tool on_action_complete called
Time: 2476.11 - Tool on_action_complete called
Time: 2476.16 - Tool on_action_complete called
Time: 2476.3 - Tool on_action_complete called
Time: 2476.4 - Tool on_action_complete called
Time: 2476.56 - Tool on_action_complete called
Time: 2476.61 - Tool on_action_complete called
Time: 2476.69 - Tool on_action_complete called
Time: 2476.78 - Tool on_action_complete called
Time: 2476.89 - Tool on_action_complete called
Time: 2476.97 - Tool on_action_complete called
Time: 2477.18 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2480.89 - Tool on_action_complete called
Time: 2481.02 - Tool on_action_complete called
***** STARTING THREAD ActionRepack
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepack
Time: 2485.18 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2488.49 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2489.36 - Tool on_action_complete called
Time: 2489.45 - Tool on_action_complete called
Time: 2489.51 - Tool on_action_complete called
Time: 2489.59 - Tool on_action_complete called
Time: 2489.67 - Tool on_action_complete called
Time: 2489.89 - Tool on_action_complete called
Time: 2489.94 - Tool on_action_complete called
Time: 2490.04 - Tool on_action_complete called
Time: 2490.11 - Tool on_action_complete called
Time: 2490.18 - Tool on_action_complete called
Time: 2490.25 - Tool on_action_complete called
Time: 2490.32 - Tool on_action_complete called
Time: 2490.42 - Tool on_action_complete called
Time: 2490.46 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2492.53 - Tool on_action_complete called
Time: 2492.67 - Tool on_action_complete called
***** STARTING THREAD ActionRepack
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepack
Time: 2498.16 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2500.22 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2500.88 - Tool on_action_complete called
Time: 2500.92 - Tool on_action_complete called
Time: 2500.96 - Tool on_action_complete called
Time: 2501.04 - Tool on_action_complete called
Time: 2501.17 - Tool on_action_complete called
Time: 2501.24 - Tool on_action_complete called
Time: 2501.38 - Tool on_action_complete called
Time: 2501.58 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2503.73 - Tool on_action_complete called
Time: 2503.93 - Tool on_action_complete called
***** STARTING THREAD ActionRepack
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepack
Time: 2508.93 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
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***** ENDING THREAD ActionGlobalMinimize
Time: 2511.59 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2512.1 - Tool on_action_complete called
Time: 2512.15 - Tool on_action_complete called
Time: 2512.23 - Tool on_action_complete called
Time: 2512.31 - Tool on_action_complete called
Time: 2512.43 - Tool on_action_complete called
Time: 2512.49 - Tool on_action_complete called
Time: 2512.61 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2514.84 - Tool on_action_complete called
Time: 2515.05 - Tool on_action_complete called
***** STARTING THREAD ActionRepack
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepack
Time: 2519.27 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2521.66 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2522.26 - Tool on_action_complete called
Time: 2522.46 - Tool on_action_complete called
Time: 2522.51 - Tool on_action_complete called
Time: 2522.73 - Tool on_action_complete called
Time: 2522.79 - Tool on_action_complete called
Time: 2522.87 - Tool on_action_complete called
Time: 2522.95 - Tool on_action_complete called
Time: 2523.07 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2525.19 - Tool on_action_complete called
Time: 2525.33 - Tool on_action_complete called
***** STARTING THREAD ActionRepack
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepack
Time: 2529.78 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2532.01 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2532.94 - Tool on_action_complete called
Time: 2533.08 - Tool on_action_complete called
Time: 2533.21 - Tool on_action_complete called
Time: 2533.43 - Tool on_action_complete called
Time: 2533.5 - Tool on_action_complete called
Time: 2533.63 - Tool on_action_complete called
Time: 2533.75 - Tool on_action_complete called
Time: 2533.81 - Tool on_action_complete called
Time: 2533.92 - Tool on_action_complete called
Time: 2534.02 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2537.07 - Tool on_action_complete called
Time: 2537.27 - Tool on_action_complete called
***** STARTING THREAD ActionRepack
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepack
Time: 2542.23 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2544.76 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2545.7 - Tool on_action_complete called
Time: 2545.82 - Tool on_action_complete called
Time: 2545.88 - Tool on_action_complete called
Time: 2546.04 - Tool on_action_complete called
Time: 2546.2 - Tool on_action_complete called
Time: 2546.31 - Tool on_action_complete called
Time: 2546.42 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2549.15 - Tool on_action_complete called
Time: 2549.38 - Tool on_action_complete called
***** STARTING THREAD ActionRepack
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepack
Time: 2553.45 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2555.6 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2556.32 - Tool on_action_complete called
Time: 2556.43 - Tool on_action_complete called
Time: 2556.49 - Tool on_action_complete called
Time: 2556.58 - Tool on_action_complete called
Time: 2556.65 - Tool on_action_complete called
Time: 2556.73 - Tool on_action_complete called
Time: 2556.88 - Tool on_action_complete called
Time: 2556.94 - Tool on_action_complete called
Time: 2557.04 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2559.86 - Tool on_action_complete called
Time: 2560 - Tool on_action_complete called
***** STARTING THREAD ActionRepack
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionRepack
Time: 2563.53 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2563.8 - Tool on_action_complete called
Time: 2563.84 - Tool on_action_complete called
Sending SOPs:

Time: 2567.74 - Tool on_action_complete called
Sending SOPs:

Sending SOPs:

Time: 2578.12 - Tool on_action_complete called
Time: 2578.12 - Tool on_action_complete called
Time: 2579.31 - Tool on_action_complete called
Time: 2579.37 - Tool on_action_complete called
Time: 2579.42 - Tool on_action_complete called
Time: 2579.51 - Tool on_action_complete called
Time: 2579.58 - Tool on_action_complete called
Time: 2579.65 - Tool on_action_complete called
Time: 2579.7 - Tool on_action_complete called
Time: 2579.93 - Tool on_action_complete called
Time: 2580.14 - Tool on_action_complete called
Time: 2580.28 - Tool on_action_complete called
Time: 2580.41 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
Unideality at position 9, adding dofs.
Unideality at position 10, adding dofs.
Sending SOPs:

***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2584.39 - Tool on_action_complete called
Time: 2584.58 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 9, adding dofs.
Unideality at position 10, adding dofs.
Sending SOPs:

***** ENDING THREAD ActionGlobalMinimize
Time: 2588.26 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 2591.31 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
***** ENDING THREAD ActionGlobalMinimize
Time: 2592.08 - Tool on_action_complete called
Time: 2592.16 - Tool on_action_complete called
Time: 2592.22 - Tool on_action_complete called
Time: 2592.25 - Tool on_action_complete called
Time: 2592.33 - Tool on_action_complete called
Time: 2592.33 - Tool on_action_complete called
Time: 2592.37 - Tool on_action_complete called
Time: 2592.4 - Tool on_action_complete called
Time: 2592.43 - Tool on_action_complete called
Time: 2592.46 - Tool on_action_complete called
Time: 2592.49 - Tool on_action_complete called
Time: 2592.52 - Tool on_action_complete called
Time: 2592.57 - Tool on_action_complete called
Time: 2592.58 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
Unideality at position 10, adding dofs.
Sending SOPs:

***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2596.38 - Tool on_action_complete called
Time: 2596.45 - Tool on_action_complete called
***** STARTING THREAD ActionRepack
RT: 111111111111111111111111111111111111111111111
Sending SOPs:

***** ENDING THREAD ActionRepack
Time: 2599.8 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2602.38 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimize
Time: 2603.36 - Tool on_action_complete called
Time: 2603.48 - Tool on_action_complete called
Time: 2603.55 - Tool on_action_complete called
Time: 2603.63 - Tool on_action_complete called
Time: 2603.7 - Tool on_action_complete called
Time: 2603.83 - Tool on_action_complete called
Time: 2603.93 - Tool on_action_complete called
Time: 2604.01 - Tool on_action_complete called
Time: 2604.04 - Tool on_action_complete called
Time: 2604.09 - Tool on_action_complete called
Time: 2604.15 - Tool on_action_complete called
Time: 2604.21 - Tool on_action_complete called
Time: 2604.28 - Tool on_action_complete called
Time: 2604.48 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimizeBackbone
RT: 111111111111111111111111111111111111111111111
***** ENDING THREAD ActionGlobalMinimizeBackbone
Time: 2608.02 - Tool on_action_complete called
Time: 2608.15 - Tool on_action_complete called
***** STARTING THREAD ActionRepack
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***** ENDING THREAD ActionRepack
Time: 2612.59 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
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***** ENDING THREAD ActionGlobalMinimize
Time: 2616.05 - Tool on_action_complete called
***** STARTING THREAD ActionGlobalMinimize
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***** ENDING THREAD ActionGlobalMinimize
Time: 2617.07 - Tool on_action_complete called
Time: 2617.12 - Tool on_action_complete called
Time: 2617.17 - Tool on_action_complete called
Time: 2617.2 - Tool on_action_complete called
Time: 2617.25 - Tool on_action_complete called
Time: 2617.25 - Tool on_action_complete called
Time: 2617.28 - Tool on_action_complete called
Time: 2617.32 - Tool on_action_complete called
Time: 2617.36 - Tool on_action_complete called
Time: 2617.43 - Tool on_action_complete called
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Time: 2617.52 - Tool on_action_complete called
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Sending SOPs:

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***** STARTING THREAD ActionGlobalMinimize
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***** STARTING THREAD ActionGlobalMinimize
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core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
core.chemical.AtomICoor: [ WARNING ] IcoorAtomID::atom_id(): Cannot get atom_id for POLYMER_LOWER of residue PRO:protein_cutpoint_upper 41. Returning BOGUS ID instead.
core.conformation.Residue: [ WARNING ] missing an atom: 41 OVU1 that depends on a nonexistent polymer connection!
core.conformation.Residue: [ WARNING ] --> generating it using idealized coordinates.
***** ENDING THREAD ActionRebuild
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SRVR_THRD getting notifications...
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Packer cancelled
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Time: 3034.33 - Tool on_action_complete called
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Sending SOPs:

Sending SOPs:

Sending SOPs:

Sending SOPs:

has key .ocmdline
has key .owts
has key .opdb
has key .opuzzle_setup
starting score : 1153.34
puzzle loaded
clear density...
ScorePanel new session
Sending SOPs:

Sending SOPs:

Sending SOPs:

Sending SOPs:

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zo3xia's picture
User offline. Last seen 21 hours 15 min ago. Offline
Joined: 10/10/2015
Groups: None

and another crash when cancelling the recipe AILearnsToPlayFoldit on the Beginner's Coronavirus puzzle on my 2012 Mac Air

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons