Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
I don't seem to have any SS predictions....or any idea what to do given some of these sequences. We need a hand fold puzzle for first timers. Totally lost
there was NO SS the first time I opened this. a little overwhelming and large for a novice... Still would like a first timer only puzzle for those of us who have never hand folded. A little smaller to be managable
Thanks
is on the screen, but you wont see beautifull helixes.
Use Ideal SS tool or rebuild to form nice helixes. Then cut, move, uncut as you like to imagine a beautifull TS
There are some video to show how to do from here:
http://foldit.wikia.com/wiki/Tutorial_Puzzles
I tried to share a version of this puzzles with my group. I could not. I noticed that there is no other shared versions of this puzzle for my group. There is no "Top evolvers" for this puzzle.
Hand folding round allows no sharing.
There will be a second round with scripts and sharing allowed.
If you want, you can share a picture to your group trough group chat.
SS predictions from the SAM server are forthcoming, so check back soon. The starting model shows secondary structure as predicted by PSIPRED.