Today we have posted an update with several suggestions from the recent chats. These include:

An increased number of quicksave slots. While there are still 3 quicksave hotkeys, a total of 10 are now accessible through recipes.

Script based recipes do not echo their commands to the output window by default. There is a checkbox in the output window to control this behavior.

A number of new functions have been added to the scripting interface, including functions for local wiggle, freezing, quicksaving and loading, setting band strength and length, and snapping sidechains to positions (similar to pulling on them).

The pulsing of the graphics has been reduced.

A button to bring up the alignment panel has been added to the selection interface.

We'll continue working on your suggestions!

Thanks for chatting today everyone! We have an update today with some suggestions that came up in the chat and before as well. This includes:

Partial threading of templates! Now you can select letters in your query sequence and click the "partial thread" button (in the top right of the Alignment window). Then when you thread, only that section of your protein will be threaded, and the rest will stay where it was. Try using this to shift subsections around easier or mix and match templates!

Threading has been modified to do more work so that your protein will be better after threading. So now it will take longer, but if you cancel it while it's working, it will give you the best that it's found so far.

There is a checkbox in the login dialog to disable network timeouts. If you are having trouble with timeouts when logging in, please try checking this box and logging in again.

A few other fixes, such as: oxygen atoms should not go off at unrealistic angles after threading, the segments that caused threading to fail will blink red a bit longer, and the messages that rise from the mouse won't get cut off by the edge of the window.