This is really good info in the graph. Is it computationally intensive to produce such a graph? Is there software which I could download and run to get such a graph? Will you make graphs like this available for other puzzles? such as during CASP? It really helps with sculpting questionable areas.
I am using the SAM-server at UC Santa Cruz and usually it takes less than 1 day to get these results back (depending on how many other users are submitting queries to the server).
I have tried to make these graphs available for all the freestyle puzzles, and the plan is to give you as much info as possible during CASP (such as 3D predictions from various servers as well as secondary structure info)
I posted a bit more info about the SAM server here if this helps: http://fold.it/portal/node/986812#comment-5158
Keep in mind, though, these are only predictions and could be incorrect!
Here is the sequence logo predicted by the SAM server.
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the amino acid Leucine at residue 122 is highly predicted to be part of a helix. However, the Tyrosine at residue 20 is predicted to have an equal probability of being anything.